RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 KRT76Q01546 638 aa19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 TTC38Q5R3I4 469 aa19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 MYSM1Q5VVJ2 828 aa19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 AGO4Q9HCK5 861 aaKnown RBP19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 CIZ1Q9ULV3 898 aaPredicted RBP19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 MTMR6Q9Y217 621 aa19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 STK24Q9Y6E0 443 aa19.82■□□□□ 0.76
CLSTN3-210ENST00000540931 A6NJR5 290 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 GGPS1O95749 300 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 C6orf222P0C671 652 aaPredicted RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 ZSCAN22P10073 491 aaPredicted RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 SFNP31947 248 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 FSCN1Q16658 493 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 DGKDQ16760 1214 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 LY6KQ17RY6 165 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 SMAP1Q8IYB5 467 aaPredicted RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 RDM1Q8NG50 284 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 TEKT3Q9BXF9 490 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 RAB34Q9BZG1 259 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 JPH1Q9HDC5 661 aaPredicted RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 SLC9A2Q9UBY0 812 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 RBM19Q9Y4C8 960 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 SZT2Q5T011 3432 aa19.81■□□□□ 0.76
CLSTN3-210ENST00000540931 SYNRGQ9UMZ2 1314 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 ADAMTS3O15072 1205 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 GAS7O60861 476 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 KCNA2P16389 499 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 CALCRLQ16602 461 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 GNASQ5JWF2 1037 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 ZNF746Q6NUN9 644 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 SPRYD3Q8NCJ5 442 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 SPATA33Q96N06 139 aa19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 ZNF396Q96N95 335 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-210ENST00000540931 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 KIF28PB7ZC32 967 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 ADAMTS4O75173 837 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 FARP2O94887 1054 aaPredicted RBP19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 ARP10275 920 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 PRPHP41219 470 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 JAK3P52333 1124 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 ARHGAP1Q07960 439 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 TMEM266Q2M3C6 531 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 EARS2Q5JPH6 523 aaKnown RBP19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 LRCH2Q5VUJ6 765 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 CYFIP1Q7L576 1253 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 KLHDC9Q8NEP7 349 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 CYP2W1Q8TAV3 490 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 SEPT1Q8WYJ6 367 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 SLC5A5Q92911 643 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 LENG9Q96B70 501 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 KATNAL1Q9BW62 490 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 KCNMB3Q9NPA1 279 aa19.79■□□□□ 0.76
CLSTN3-210ENST00000540931 RANBP2P49792 3224 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 MSH4O15457 936 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 DKC1O60832 514 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 ARIH2O95376 493 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 TDP2O95551 362 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 SEMA3FQ13275 785 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 LRRC41Q15345 812 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 ARL6IP4Q66PJ3 421 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 CHRDL2Q6WN34 429 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 UBE2Q1Q7Z7E8 422 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 TSHZ2Q9NRE2 1034 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 CFAP45Q9UL16 551 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 PCDHA12Q9UN75 941 aa19.78■□□□□ 0.76
CLSTN3-210ENST00000540931 F13A1P00488 732 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 HOXD8P13378 290 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 MCM7P33993 719 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 SLC26A2P50443 739 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 SP2Q02086 613 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 MIS18BP1Q6P0N0 1132 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 ETNPPLQ8TBG4 499 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 GLT1D1Q96MS3 346 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 AZI2Q9H6S1 392 aa19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 ZNF215Q9UL58 517 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 DDX49Q9Y6V7 483 aaKnown RBP19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 MORC2Q9Y6X9 1032 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-210ENST00000540931 ELP1O95163 1332 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 WDR64B1ANS9 1081 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 ATP9AO75110 1047 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 BRD1O95696 1058 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 PGK1P00558 417 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 OR52Z1P0C646 297 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 ATP2B1P20020 1258 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 RESTQ13127 1097 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 FAM160B1Q5W0V3 765 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 NECAB2Q7Z6G3 386 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 FERMT3Q86UX7 667 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 DPF3Q92784 378 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 IPO9Q96P70 1041 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 PCDHA10Q9Y5I2 948 aa19.76■□□□□ 0.75
CLSTN3-210ENST00000540931 FAM205CA6NFA0 338 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 EDIL3O43854 480 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 PSMD10O75832 226 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 PSAPP07602 524 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 MMP3P08254 477 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 PPP2R5CQ13362 524 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 PDIA5Q14554 519 aa19.75■□□□□ 0.75
CLSTN3-210ENST00000540931 ZNF174Q15697 407 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms