RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 LGALS2P05162 132 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 RPLP2P05387 115 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 ZNF286BP0CG31 522 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 GNAT1P11488 350 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 GSPT1P15170 499 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 PLA2G5P39877 138 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 SEMA3FQ13275 785 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 PUS10Q3MIT2 529 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 TTC22Q5TAA0 569 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 PCNX4Q63HM2 1172 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 B4GALNT3Q6L9W6 998 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 CHST3Q7LGC8 479 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 SPRED2Q7Z698 418 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 GIMAP8Q8ND71 665 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 DBF4BQ8NFT6 615 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 NEK9Q8TD19 979 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 GPR20Q99678 358 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 VAT1LQ9HCJ6 419 aa12.98□□□□□ -0.33
CLSTN3-206ENST00000535668 NRCAMQ92823 1304 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 C17orf102A2RUQ5 167 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 PI4K2BG5E9Z4 385 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 MEIS2O14770 477 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 SGSM2O43147 1006 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 DHX16O60231 1041 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 AMHP03971 560 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 SMIM10L2AP0DMW4 78 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 SMIM10L2BP0DMW5 78 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 CHMLP26374 656 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 ZNF200P98182 395 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 SART3Q15020 963 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 KRT40Q6A162 431 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 MB21D2Q8IYB1 491 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 CRIPAKQ8N1N5 446 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 TMTC2Q8N394 836 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 NCOA7Q8NI08 942 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 PPP1R13LQ8WUF5 828 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 MRPL38Q96DV4 380 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 PIGSQ96S52 555 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 ALG1Q9BT22 464 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 ZBED2Q9BTP6 218 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 EHMT1Q9H9B1 1298 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 CERS4Q9HA82 394 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 RC3H2Q9HBD1 1191 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 SQORQ9Y6N5 450 aa12.97□□□□□ -0.33
CLSTN3-206ENST00000535668 TTC3P53804 2025 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 COL4A4P53420 1690 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 MBLAC1A4D2B0 266 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 E7EWF7 191 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 H3BNC9 293 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 IFIT3O14879 490 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 NCK2O43639 380 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 DDAH1O94760 285 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 LINC00271P0C7V0 271 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 MYCLP12524 364 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 PDE4AP27815 886 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 HOXA13P31271 388 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 LIFRP42702 1097 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 TAF2Q6P1X5 1199 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 SEPT8Q92599 483 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 ATP6V0A1Q93050 837 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 GPRASP2Q96D09 838 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 CDHR1Q96JP9 859 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 NECAB3Q96P71 396 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 UBE2ZQ9H832 354 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 MLXIPQ9HAP2 919 aa12.96□□□□□ -0.33
CLSTN3-206ENST00000535668 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 ERICH2A1L162 156 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 TREHO43280 583 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 RB1P06400 928 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 THPOP40225 353 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 GNAQP50148 359 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 ANTXR2P58335 489 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 PTH1RQ03431 593 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 WTAPQ15007 396 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.95□□□□□ -0.345e-8■□□□□ 11.2
CLSTN3-206ENST00000535668 CATIPQ7Z7H3 387 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 FAM178BQ8IXR5 827 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 EXOC6Q8TAG9 804 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 GPKOWQ92917 476 aaPredicted RBP eCLIP12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 CLP1Q92989 425 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 SENP2Q9HC62 589 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 C11orf16Q9NQ32 467 aa12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 ZNF215Q9UL58 517 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-206ENST00000535668 HOXD11P31277 338 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 KIF5BP33176 963 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 SKIV2LQ15477 1246 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 PTPROQ16827 1216 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 CTC1Q2NKJ3 1217 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 EPC2Q52LR7 807 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 TIGD5Q53EQ6 642 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 TMCO2Q7Z6W1 182 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 MICALL1Q8N3F8 863 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 GDPD5Q8WTR4 605 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 LRFN3Q9BTN0 628 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 LMAN2LQ9H0V9 348 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 BCAS3Q9H6U6 928 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 LY9Q9HBG7 655 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 PRKAG3Q9UGI9 489 aa12.94□□□□□ -0.34
CLSTN3-206ENST00000535668 CACNA1HO95180 2353 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms