RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TINF2Q9BSI4 451 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 EPN3Q9H201 632 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 ZNF408Q9H9D4 720 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 R3HCC1Q9Y3T6 440 aaKnown RBP5.99□□□□□ -1.45
CD44-235ENST00000532339 RGS12O14924 1447 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 SYNMO15061 1565 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 A0A1B0GTL3 188 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 AGRPO00253 132 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 KCNJ6P48051 423 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 MRM1Q6IN84 353 aaKnown RBP5.98□□□□□ -1.45
CD44-235ENST00000532339 CEP68Q76N32 757 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 CARFQ8N187 725 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 Q8N1Y9 231 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 NOX5Q96PH1 765 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 SPATA25Q9BR10 227 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 ADAM7Q9H2U9 754 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 USP40Q9NVE5 1235 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 NTMQ9P121 344 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 CDK13Q14004 1512 aaKnown RBP5.98□□□□□ -1.45
CD44-235ENST00000532339 SPATA31A6Q5VVP1 1343 aa5.98□□□□□ -1.45
CD44-235ENST00000532339 NEURL4Q96JN8 1562 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 ATP10BO94823 1461 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 NHSL1Q5SYE7 1610 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 MYO3AQ8NEV4 1616 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 SGSM2O43147 1006 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 SMARCA5O60264 1052 aaPredicted RBP5.97□□□□□ -1.45
CD44-235ENST00000532339 C8BP07358 591 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 CELA3BP08861 270 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 FPR2P25090 351 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 GFRA1P56159 465 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 TESK1Q15569 626 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 NT5DC1Q5TFE4 455 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 TTLL7Q6ZT98 887 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 MIB1Q86YT6 1006 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 CCDC103Q8IW40 242 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 PPIL6Q8IXY8 311 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 LINC00482Q8N8I6 264 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 KREMEN2Q8NCW0 462 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 MICAL1Q8TDZ2 1067 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 ZBTB8AQ96BR9 441 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 DDX11Q96FC9 970 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 TRMT2BQ96GJ1 504 aaKnown RBP5.97□□□□□ -1.45
CD44-235ENST00000532339 TMEM169Q96HH4 297 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 TMEFF2Q9UIK5 374 aaPredicted RBP5.97□□□□□ -1.45
CD44-235ENST00000532339 X6R8D5 127 aa5.97□□□□□ -1.45
CD44-235ENST00000532339 GJB6O95452 261 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 DNAJA1P31689 397 aaKnown RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 LTBRP36941 435 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 BCL6P41182 706 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 SARSP49591 514 aaKnown RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 MILR1Q7Z6M3 343 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 ZC3H18Q86VM9 953 aaKnown RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 MCF2L2Q86YR7 1114 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 SPATA6Q9NWH7 488 aaPredicted RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 PALD1Q9ULE6 856 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 COA3Q9Y2R0 106 aaPredicted RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 REREQ9P2R6 1566 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 SUPT6HQ7KZ85 1726 aaKnown RBP5.96□□□□□ -1.46
CD44-235ENST00000532339 LRP6O75581 1613 aa5.96□□□□□ -1.46
CD44-235ENST00000532339 ZMYM3Q14202 1370 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 CARMIL1Q5VZK9 1371 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 GJA9P57773 515 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 RBM6P78332 1123 aaKnown RBP5.95□□□□□ -1.46
CD44-235ENST00000532339 SF1Q15637 639 aaKnown RBP5.95□□□□□ -1.46
CD44-235ENST00000532339 CHRNA2Q15822 529 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 PRSS53Q2L4Q9 553 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 SKOR2Q2VWA4 1001 aaPredicted RBP5.95□□□□□ -1.46
CD44-235ENST00000532339 SLC10A6Q3KNW5 377 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 ZFYVE27Q5T4F4 411 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 CD300LDQ6UXZ3 194 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 NLRP10Q86W26 655 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 FAM126BQ8IXS8 530 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 SLC43A3Q8NBI5 491 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 TMEM145Q8NBT3 493 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 RCBTB1Q8NDN9 531 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 GORASP1Q9BQQ3 440 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 SCAPERQ9BY12 1400 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 NGRNQ9NPE2 291 aaKnown RBP5.95□□□□□ -1.46
CD44-235ENST00000532339 PCDHA2Q9Y5H9 948 aa5.95□□□□□ -1.46
CD44-235ENST00000532339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.94□□□□□ -1.46
CD44-235ENST00000532339 POLR1AO95602 1720 aaPredicted RBP5.94□□□□□ -1.46
CD44-235ENST00000532339 H7BY64 318 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 ARNTLO00327 626 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 LSAMPQ13449 338 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 SMAD4Q13485 552 aaKnown RBP5.94□□□□□ -1.46
CD44-235ENST00000532339 KYQ8NBH2 561 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 HNRNPLLQ8WVV9 542 aaKnown RBP5.94□□□□□ -1.46
CD44-235ENST00000532339 CHAMP1Q96JM3 812 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 GMLQ99445 158 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 YIPF4Q9BSR8 244 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 C11orf84Q9BUA3 381 aaPredicted RBP5.94□□□□□ -1.46
CD44-235ENST00000532339 MROH2AA6NES4 1674 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.94□□□□□ -1.46
CD44-235ENST00000532339 EP400Q96L91 3159 aa5.94□□□□□ -1.46
CD44-235ENST00000532339 NOBOXO60393 691 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 CAPNS1P04632 268 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 THBS2P35442 1172 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 PPP2R2AP63151 447 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 PLP2Q04941 152 aa5.93□□□□□ -1.46
CD44-235ENST00000532339 MAP4K2Q12851 820 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms