RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 MENTQ9BUN1 341 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 JAM3Q9BX67 310 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 RHOBTB2Q9BYZ6 727 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 CLDND1Q9NY35 253 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 ZKSCAN5Q9Y2L8 839 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 SNX11Q9Y5W9 270 aa4.01□□□□□ -1.77
CD44-234ENST00000531873 TMEM265A0A087WTH1 108 aa4□□□□□ -1.77
CD44-234ENST00000531873 FADS2P1A8MWK0 482 aa4□□□□□ -1.77
CD44-234ENST00000531873 MAN2B1O00754 1011 aa4□□□□□ -1.77
CD44-234ENST00000531873 PRPF3O43395 683 aaKnown RBP4□□□□□ -1.77
CD44-234ENST00000531873 PRC1O43663 620 aa4□□□□□ -1.77
CD44-234ENST00000531873 NPHS1O60500 1241 aa4□□□□□ -1.77
CD44-234ENST00000531873 ULK1O75385 1050 aa4□□□□□ -1.77
CD44-234ENST00000531873 GNALP38405 381 aa4□□□□□ -1.77
CD44-234ENST00000531873 KPNA1P52294 538 aaPredicted RBP4□□□□□ -1.77
CD44-234ENST00000531873 GTF2A2P52657 109 aa4□□□□□ -1.77
CD44-234ENST00000531873 HHIPL2Q6UWX4 724 aa4□□□□□ -1.77
CD44-234ENST00000531873 HDGFL2Q7Z4V5 671 aaPredicted RBP4□□□□□ -1.77
CD44-234ENST00000531873 ATG4DQ86TL0 474 aaPredicted RBP4□□□□□ -1.77
CD44-234ENST00000531873 SLCO6A1Q86UG4 719 aa4□□□□□ -1.77
CD44-234ENST00000531873 WFDC3Q8IUB2 231 aa4□□□□□ -1.77
CD44-234ENST00000531873 CCDC146Q8IYE0 955 aa4□□□□□ -1.77
CD44-234ENST00000531873 C2orf69Q8N8R5 385 aa4□□□□□ -1.77
CD44-234ENST00000531873 PLEKHO2Q8TD55 490 aa4□□□□□ -1.77
CD44-234ENST00000531873 SLC5A5Q92911 643 aa4□□□□□ -1.77
CD44-234ENST00000531873 HHIPL1Q96JK4 782 aa4□□□□□ -1.77
CD44-234ENST00000531873 CHAMP1Q96JM3 812 aa4□□□□□ -1.77
CD44-234ENST00000531873 JMJD8Q96S16 334 aa4□□□□□ -1.77
CD44-234ENST00000531873 MS4A5Q9H3V2 200 aa4□□□□□ -1.77
CD44-234ENST00000531873 AASDHPPTQ9NRN7 309 aa4□□□□□ -1.77
CD44-234ENST00000531873 CATSPERZQ9NTU4 200 aa4□□□□□ -1.77
CD44-234ENST00000531873 MARCH2Q9P0N8 246 aa4□□□□□ -1.77
CD44-234ENST00000531873 GULP1Q9UBP9 304 aa4□□□□□ -1.77
CD44-234ENST00000531873 X6R8D5 127 aa4□□□□□ -1.77
CD44-234ENST00000531873 E2F8A0AVK6 867 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 WTIPA6NIX2 430 aaPredicted RBP3.99□□□□□ -1.77
CD44-234ENST00000531873 KCNK3O14649 394 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 GSTA4O15217 222 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 NKRFO15226 690 aaKnown RBP eCLIP3.99□□□□□ -1.77
CD44-234ENST00000531873 MT-CO1P00395 513 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 CD96P40200 585 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 SESN3P58005 492 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 PHC1P78364 1004 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 IRF9Q00978 393 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 OCRLQ01968 901 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 MESP2Q0VG99 397 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 KLF1Q13351 362 aaPredicted RBP3.99□□□□□ -1.77
CD44-234ENST00000531873 TERF2Q15554 542 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 GPR19Q15760 415 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 CRY1Q16526 586 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 DDB1Q16531 1140 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 PTPN21Q16825 1174 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 ARHGAP44Q17R89 818 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 BROXQ5VW32 411 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 NXNQ6DKJ4 435 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 CEP68Q76N32 757 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 OTOP3Q7RTS5 596 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 C14orf80Q86SX3 495 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 OSTM1Q86WC4 334 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 PTRH1Q86Y79 214 aaKnown RBP3.99□□□□□ -1.77
CD44-234ENST00000531873 CMIPQ8IY22 773 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 TCEAL8Q8IYN2 117 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 CHPFQ8IZ52 775 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 PANK1Q8TE04 598 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 LINC01599Q8WXQ3 324 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 TMEM169Q96HH4 297 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 AHCYL2Q96HN2 611 aaKnown RBP3.99□□□□□ -1.77
CD44-234ENST00000531873 FUBP3Q96I24 572 aaKnown RBP eCLIP3.99□□□□□ -1.77
CD44-234ENST00000531873 HRASLS5Q96KN8 279 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 CAMKK2Q96RR4 588 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 SLC38A3Q99624 504 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 MTA3Q9BTC8 594 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 BOCQ9BWV1 1114 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 SLC13A1Q9BZW2 595 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 GEMIN8Q9NWZ8 242 aaKnown RBP3.99□□□□□ -1.77
CD44-234ENST00000531873 BTG4Q9NY30 223 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 RAPGEFL1Q9UHV5 662 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 RWDD3Q9Y3V2 267 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 SPEF1Q9Y4P9 236 aa3.99□□□□□ -1.77
CD44-234ENST00000531873 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.98□□□□□ -1.77
CD44-234ENST00000531873 SLC12A8A0AV02 714 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 LCHNA4D1U4 455 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 B8ZZF3 427 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 H7C1D1 291 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 USP2O75604 605 aaPredicted RBP3.98□□□□□ -1.77
CD44-234ENST00000531873 RFPL1O75677 317 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 KRT37O76014 449 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 EFEMP2O95967 443 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 MYBL2P10244 700 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 GNAT1P11488 350 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 COL6A2P12110 1019 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 KRT15P19012 456 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 SLC9A1P19634 815 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 SMAD3P84022 425 aaKnown RBP3.98□□□□□ -1.77
CD44-234ENST00000531873 PRKCQQ04759 706 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 PCBP2Q15366 365 aaKnown RBP eCLIP3.98□□□□□ -1.77
CD44-234ENST00000531873 SMAD2Q15796 467 aaKnown RBP3.98□□□□□ -1.77
CD44-234ENST00000531873 ZNF792Q3KQV3 632 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 FAM102BQ5T8I3 360 aa3.98□□□□□ -1.77
CD44-234ENST00000531873 ANGEL2Q5VTE6 544 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms