RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PCDHA2Q9Y5H9 948 aa21.27■□□□□ 0.99
VPS28-213ENST00000530983 THSD7AQ9UPZ6 1657 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 TMC4Q7Z404 712 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 TBC1D7Q9P0N9 293 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 PCDHA12Q9UN75 941 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 LTBP1Q14766 1721 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 SLC16A2P36021 539 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 SLC9C1Q4G0N8 1177 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 SYN2Q92777 582 aaPredicted RBP21.26■□□□□ 0.99
VPS28-213ENST00000530983 RBM17Q96I25 401 aaKnown RBP21.26■□□□□ 0.99
VPS28-213ENST00000530983 STIM2Q9P246 746 aa21.26■□□□□ 0.99
VPS28-213ENST00000530983 E9PMD0 336 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 SSBP05455 408 aaKnown RBP eCLIP21.25■□□□□ 0.99
VPS28-213ENST00000530983 GTF2IP78347 998 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 APBA1Q02410 837 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 SFMBT2Q5VUG0 894 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 CEP63Q96MT8 703 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 RBM12Q9NTZ6 932 aaKnown RBP21.25■□□□□ 0.99
VPS28-213ENST00000530983 C10orf71Q711Q0 1435 aa21.25■□□□□ 0.99
VPS28-213ENST00000530983 GREB1LQ9C091 1923 aaPredicted RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 USP17L10C9JJH3 530 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 SERPING1P05155 500 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 GCFC2P16383 781 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 MRPL12P52815 198 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 TRIM59Q8IWR1 403 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 LSM14BQ9BX40 385 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 NT5C3AQ9H0P0 336 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 NUCKS1Q9H1E3 243 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 SERPINB13Q9UIV8 391 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 KDM3AQ9Y4C1 1321 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 ZBTB5O15062 677 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 MARCH6O60337 910 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 PAFAH1B1P43034 410 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 MARSP56192 900 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 POLR2FP61218 127 aaKnown RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 NELFCDQ8IXH7 590 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 UIMC1Q96RL1 719 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 PSTPIP2Q9H939 334 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 KANSL2Q9H9L4 492 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 KIAA1024Q9UPX6 916 aa21.24■□□□□ 0.99
VPS28-213ENST00000530983 ATF5Q9Y2D1 282 aaPredicted RBP21.24■□□□□ 0.99
VPS28-213ENST00000530983 NPHP3-ACAD11A0A0J9YXS1 232 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 SHOX2O60902 331 aaPredicted RBP21.23■□□□□ 0.99
VPS28-213ENST00000530983 SHMT1P34896 483 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 EPHB4P54760 987 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 MS4A14Q96JA4 679 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 BMP2KQ9NSY1 1161 aaPredicted RBP21.23■□□□□ 0.99
VPS28-213ENST00000530983 USP21Q9UK80 565 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 ATP6V0A2Q9Y487 856 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 GOLGA6CA6NDK9 693 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 C6orf229H3BNL8 230 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 BBOX1O75936 387 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 GOLGA6DP0CG33 693 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 CACNB1Q02641 598 aaPredicted RBP21.23■□□□□ 0.99
VPS28-213ENST00000530983 KCTD1Q719H9 257 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 FAM76AQ8TAV0 307 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 SCFD1Q8WVM8 642 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 KCTD10Q9H3F6 313 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 GOLGA6AQ9NYA3 693 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 TSKSQ9UJT2 592 aa21.23■□□□□ 0.99
VPS28-213ENST00000530983 POTEB3A0JP26 581 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 POTECB2RU33 542 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 PLA2G4BP0C869 781 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 TNFRSF8P28908 595 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 NAP1L1P55209 391 aaKnown RBP21.22■□□□□ 0.99
VPS28-213ENST00000530983 C8orf74Q6P047 294 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 POTEBQ6S5H4 581 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 CCDC65Q8IXS2 484 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 SH3GL2Q99962 352 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 PLEKHA4Q9H4M7 779 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS28-213ENST00000530983 LRRC37AA6NMS7 1700 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.22■□□□□ 0.99
VPS28-213ENST00000530983 F8W031 263 aaPredicted RBP21.22■□□□□ 0.99
VPS28-213ENST00000530983 GNA14O95837 355 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 SERPINB2P05120 415 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 ADRA2BP18089 450 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 GPATCH4Q5T3I0 446 aaKnown RBP21.22■□□□□ 0.99
VPS28-213ENST00000530983 EMBQ6PCB8 327 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 TSEN2Q8NCE0 465 aaKnown RBP21.22■□□□□ 0.99
VPS28-213ENST00000530983 ADAMTSL1Q8N6G6 1762 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 QSER1Q2KHR3 1735 aa21.22■□□□□ 0.99
VPS28-213ENST00000530983 MYO3BQ8WXR4 1341 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 PPFIA4O75335 1185 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 PALMO75781 387 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 GYS1P13807 737 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 NAB2Q15742 525 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 SLC18A3Q16572 532 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 CFAP221Q4G0U5 840 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 GPBP1Q86WP2 473 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 TBC1D5Q92609 795 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 LRRC4BQ9NT99 713 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 SWAP70Q9UH65 585 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 UBR3Q6ZT12 1888 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L15C9J2P7 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L13C9JLJ4 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L11C9JVI0 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L18D6R9N7 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L22D6RA61 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L17D6RBQ6 530 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms