RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GUCD1Q96NT3 240 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 SEZ6LQ9BYH1 1024 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 IL23AQ9NPF7 189 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 JADE2Q9NQC1 790 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 GTF2IRD1Q9UHL9 959 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 SMCO2A6NFE2 343 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 STAM2O75886 525 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 LGALS2P05162 132 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 IFNAR1P17181 557 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 PSMA5P28066 241 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 PBX2P40425 430 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 NAPAP54920 295 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 ADAM17P78536 824 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 PPIGQ13427 754 aaKnown RBP eCLIP12.23□□□□□ -0.45
CD44-227ENST00000528086 MBTPS1Q14703 1052 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 KIAA0753Q2KHM9 967 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 FAM47CQ5HY64 1035 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 PPP1R18Q6NYC8 613 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 XRRA1Q6P2D8 792 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 DEFB123Q8N688 67 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 RASGRP4Q8TDF6 673 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 CUL5Q93034 780 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 GPRASP2Q96D09 838 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 RNPC3Q96LT9 517 aaKnown RBP12.23□□□□□ -0.45
CD44-227ENST00000528086 AIFM3Q96NN9 605 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 PCYT2Q99447 389 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 SENP7Q9BQF6 1050 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 ALG1Q9BT22 464 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 ANO3Q9BYT9 981 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 ZMYND12Q9H0C1 365 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 NAP1L2Q9ULW6 460 aaPredicted RBP12.23□□□□□ -0.45
CD44-227ENST00000528086 KAT6AQ92794 2004 aa12.23□□□□□ -0.45
CD44-227ENST00000528086 IGLV3-22A0A075B6J6 115 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 ESYT2A0FGR8 921 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 FAM86B1E9PN63 330 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 LARGE1O95461 756 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 CTDNEP1O95476 244 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
CD44-227ENST00000528086 FAM86B2P0C5J1 330 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 IQCF3P0C7M6 154 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 SREBF1P36956 1147 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 ADCY7P51828 1080 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 CHMP4BP1P59074 171 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 RBL2Q08999 1139 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 ITGB3BPQ13352 177 aaPredicted RBP12.22□□□□□ -0.45
CD44-227ENST00000528086 PTGISQ16647 500 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 BRDTQ58F21 947 aaPredicted RBP12.22□□□□□ -0.45
CD44-227ENST00000528086 JAKMIP3Q5VZ66 844 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 TMEM199Q8N511 208 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 HERVK_113Q902F9 699 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 MXRA8Q9BRK3 442 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 RNPEPQ9H4A4 650 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 TPCN1Q9ULQ1 816 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 CYP46A1Q9Y6A2 500 aa12.22□□□□□ -0.45
CD44-227ENST00000528086 M0R2N6 131 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 MEIS1O00470 390 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 DHX15O43143 795 aaKnown RBP12.21□□□□□ -0.45
CD44-227ENST00000528086 NBNO60934 754 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 SMAD3P84022 425 aaKnown RBP12.21□□□□□ -0.45
CD44-227ENST00000528086 FGD1P98174 961 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 ST3GAL1Q11201 340 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 NEDD9Q14511 834 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 LENG9Q96B70 501 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 ZNF274Q96GC6 653 aaPredicted RBP12.21□□□□□ -0.45
CD44-227ENST00000528086 RNF26Q9BY78 433 aaPredicted RBP12.21□□□□□ -0.45
CD44-227ENST00000528086 SEMA6BQ9H3T3 888 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 MLXIPQ9HAP2 919 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 KCNH7Q9NS40 1196 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 PKD2L1Q9P0L9 805 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 VPS54Q9P1Q0 977 aa12.21□□□□□ -0.45
CD44-227ENST00000528086 A0A0C4DFX4 3053 aa12.21□□□□□ -0.46
CD44-227ENST00000528086 UNC80Q8N2C7 3258 aa12.21□□□□□ -0.46
CD44-227ENST00000528086 SPDYE3A6NKU9 549 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 H3BRB1 525 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 hCG_1984214I3L0E3 225 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 PITPNM1O00562 1244 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 CCNE2O96020 404 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SUPT20HL2P0C7V6 817 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SMIM10L2AP0DMW4 78 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SMIM10L2BP0DMW5 78 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 CKBP12277 381 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SP4Q02446 784 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SCRN1Q12765 414 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
CD44-227ENST00000528086 GNPTABQ3T906 1256 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 C8orf34Q49A92 452 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 OTOP2Q7RTS6 562 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 ZNF713Q8N859 430 aaPredicted RBP12.2□□□□□ -0.46
CD44-227ENST00000528086 FAM161BQ96MY7 647 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 UIMC1Q96RL1 719 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 KIF2CQ99661 725 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 SLC26A6Q9BXS9 759 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 TUT1Q9H6E5 874 aaKnown RBP12.2□□□□□ -0.46
CD44-227ENST00000528086 AGO4Q9HCK5 861 aaKnown RBP12.2□□□□□ -0.46
CD44-227ENST00000528086 GJB4Q9NTQ9 266 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 PDRG1Q9NUG6 133 aa12.2□□□□□ -0.46
CD44-227ENST00000528086 YBX2Q9Y2T7 364 aaKnown RBP12.2□□□□□ -0.46
CD44-227ENST00000528086 LOXHD1Q8IVV2 1947 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 CCDC196A0A1B0GTZ2 297 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 TREHO43280 583 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms