RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SND1Q7KZF4 910 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-225ENST00000527326 SLC35F6Q8N357 371 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 BEND7Q8N7W2 519 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-225ENST00000527326 NOA1Q8NC60 698 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 OTUD7AQ8TE49 926 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 FBF1Q8TES7 1133 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 SREK1Q8WXA9 508 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 IQCDQ96DY2 449 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CCDC51Q96ER9 411 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 IFT43Q96FT9 208 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 DHTKD1Q96HY7 919 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 SEC16BQ96JE7 1060 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 RNPC3Q96LT9 517 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 CATSPER2Q96P56 530 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 SH3GL1Q99961 368 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CFHR5Q9BXR6 569 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 EIF2AQ9BY44 585 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 ALDH8A1Q9H2A2 487 aaPredicted RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 MRPL44Q9H9J2 332 aaKnown RBP6.38□□□□□ -1.39
CD44-225ENST00000527326 ETNK1Q9HBU6 452 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 TBCCD1Q9NVR7 557 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 RMND1Q9NWS8 449 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 NLRP2Q9NX02 1062 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CTTNBP2NLQ9P2B4 639 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 PDP2Q9P2J9 529 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 SCOCQ9UIL1 159 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 RCOR1Q9UKL0 485 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ZMIZ1Q9ULJ6 1067 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 CYP46A1Q9Y6A2 500 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 ABCC6O95255 1503 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 MROH2AA6NES4 1674 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 KIAA1210Q9ULL0 1709 aa6.38□□□□□ -1.39
CD44-225ENST00000527326 C3P01024 1663 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 PTPRTO14522 1441 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CNTNAP5Q8WYK1 1306 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SALL3Q9BXA9 1300 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TMEM247A6NEH6 219 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CCT8L1PA6NM43 557 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 AKR1B15C9JRZ8 316 aaPredicted RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 TRAPPC3O43617 180 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 KDM1AO60341 852 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 GFPT2O94808 682 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 PAEPP09466 180 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 MSX1P28360 303 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 HOXD12P35452 270 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 KRT9P35527 623 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TMPOP42166 694 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 SERPINB8P50452 374 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CCT8P50990 548 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ZNF131P52739 623 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ITIH3Q06033 890 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TMEM62Q0P6H9 643 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SPIDRQ14159 915 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SUZ12Q15022 739 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 RCN1Q15293 331 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SLC44A4Q53GD3 710 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TMEM164Q5U3C3 297 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SPECC1LQ69YQ0 1117 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CEP85Q6P2H3 762 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TMEM154Q6P9G4 183 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 RASGRP2Q7LDG7 609 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TRAPPC11Q7Z392 1133 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 NANOGNBQ7Z5D8 188 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 PODNQ7Z5L7 613 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 CATIPQ7Z7H3 387 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 HOOK3Q86VS8 718 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ANKS4BQ8N8V4 417 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TC2NQ8N9U0 490 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 MLKLQ8NB16 471 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 NEK9Q8TD19 979 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 USP33Q8TEY7 942 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 STK32AQ8WU08 396 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 IFT81Q8WYA0 676 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 MRPS27Q92552 414 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 PTPRN2Q92932 1015 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 GFM2Q969S9 779 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 AZIN2Q96A70 460 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ABHD8Q96I13 439 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 IFT74Q96LB3 600 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ATP6V1G3Q96LB4 118 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 GBP5Q96PP8 586 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 NR1H4Q96RI1 486 aaPredicted RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 FAM167BQ9BTA0 163 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TIPINQ9BVW5 301 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 PUS3Q9BZE2 481 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 ZCWPW1Q9H0M4 648 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 SIL1Q9H173 461 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 IRF2BPLQ9H1B7 796 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 TAOK3Q9H2K8 898 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 RUBCNLQ9H714 662 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 DDX21Q9NR30 783 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-225ENST00000527326 MIS18AQ9NYP9 233 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-225ENST00000527326 LARSQ9P2J5 1176 aaKnown RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 SUCLA2Q9P2R7 463 aaPredicted RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 STAP2Q9UGK3 403 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 IQSEC3Q9UPP2 1182 aaPredicted RBP6.37□□□□□ -1.39
CD44-225ENST00000527326 LEMD3Q9Y2U8 911 aa6.37□□□□□ -1.39
CD44-225ENST00000527326 ATP6V0A2Q9Y487 856 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms