RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 PARNO95453 639 aaKnown RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 FGBP02675 491 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 LGALS2P05162 132 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 GNA11P29992 359 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 CLK2P49760 499 aaKnown RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 NTRK3Q16288 839 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 GDF6Q6KF10 455 aaPredicted RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 CPLX2Q6PUV4 134 aaKnown RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 ZNF365Q70YC5 407 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 AFAP1L1Q8TED9 768 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 HERVK_113Q902F9 699 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 GPR20Q99678 358 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 ALG1Q9BT22 464 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 ZMYND12Q9H0C1 365 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 PDRG1Q9NUG6 133 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 HDAC6Q9UBN7 1215 aa23.58■■□□□ 1.37
VPS28-206ENST00000526734 ZNF215Q9UL58 517 aaPredicted RBP23.58■■□□□ 1.37
VPS28-206ENST00000526734 H3BRB1 525 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 SORBS3O60504 671 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 SREBF1P36956 1147 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 ZNF697Q5TEC3 545 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 TRIM22Q8IYM9 498 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 BICD2Q8TD16 824 aa23.57■■□□□ 1.36
VPS28-206ENST00000526734 UPF3BQ9BZI7 483 aaKnown RBP23.57■■□□□ 1.36
VPS28-206ENST00000526734 TUT1Q9H6E5 874 aaKnown RBP23.57■■□□□ 1.36
VPS28-206ENST00000526734 LAMA3Q16787 3333 aa23.56■■□□□ 1.36
VPS28-206ENST00000526734 KCNA2P16389 499 aa23.56■■□□□ 1.36
VPS28-206ENST00000526734 PTK7Q13308 1070 aa23.56■■□□□ 1.36
VPS28-206ENST00000526734 PKN1Q16512 942 aa23.56■■□□□ 1.36
VPS28-206ENST00000526734 FAM177A1Q8N128 213 aaPredicted RBP23.56■■□□□ 1.36
VPS28-206ENST00000526734 MXRA8Q9BRK3 442 aa23.56■■□□□ 1.36
VPS28-206ENST00000526734 CPLX1O14810 134 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 ACRP10323 421 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 NIPA1Q7RTP0 329 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 REXO1Q8N1G1 1221 aaKnown RBP23.55■■□□□ 1.36
VPS28-206ENST00000526734 PHKBQ93100 1093 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 SCLYQ96I15 445 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 SLC26A6Q9BXS9 759 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 SH3GLB2Q9NR46 395 aa23.55■■□□□ 1.36
VPS28-206ENST00000526734 IQCF3P0C7M6 154 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 ACTN1P12814 892 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 CCT2P78371 535 aaKnown RBP23.54■■□□□ 1.36
VPS28-206ENST00000526734 ANKRD1Q15327 319 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 CEP55Q53EZ4 464 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 PPP1R13LQ8WUF5 828 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 IL17RAQ96F46 866 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 CTAGE1Q96RT6 745 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 MTMR10Q9NXD2 777 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 MYH7BA7E2Y1 1941 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 NFASCO94856 1347 aa23.54■■□□□ 1.36
VPS28-206ENST00000526734 C17orf102A2RUQ5 167 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 GNAT1P11488 350 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 SELPP16109 830 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 HOXC8P31273 242 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 ARHGAP4P98171 946 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 SEPT1Q8WYJ6 367 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 BCAS3Q9H6U6 928 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 NCOA5Q9HCD5 579 aaKnown RBP23.53■■□□□ 1.36
VPS28-206ENST00000526734 KCNH7Q9NS40 1196 aa23.53■■□□□ 1.36
VPS28-206ENST00000526734 ATP9AO75110 1047 aa23.52■■□□□ 1.36
VPS28-206ENST00000526734 CDKL5O76039 1030 aa23.52■■□□□ 1.36
VPS28-206ENST00000526734 SSRP1Q08945 709 aaKnown RBP23.52■■□□□ 1.36
VPS28-206ENST00000526734 SDF4Q9BRK5 362 aa23.52■■□□□ 1.36
VPS28-206ENST00000526734 JPH1Q9HDC5 661 aaPredicted RBP23.52■■□□□ 1.36
VPS28-206ENST00000526734 TMEM260Q9NX78 707 aa23.52■■□□□ 1.36
VPS28-206ENST00000526734 TANC1Q9C0D5 1861 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 MEIS1O00470 390 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 DEXIO95424 95 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 CYP3A4P08684 503 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 SMIM10L2AP0DMW4 78 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 SMIM10L2BP0DMW5 78 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 TCF7P36402 384 aaPredicted RBP23.51■■□□□ 1.35
VPS28-206ENST00000526734 ZNF76P36508 570 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 SP4Q02446 784 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 JAKMIP3Q5VZ66 844 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 Q7L0L9 218 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 LRRC8DQ7L1W4 858 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 SERINC5Q86VE9 423 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 DHX38Q92620 1227 aaKnown RBP23.51■■□□□ 1.35
VPS28-206ENST00000526734 PGBD1Q96JS3 809 aa23.51■■□□□ 1.35
VPS28-206ENST00000526734 CAND2O75155 1236 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 RAB30Q15771 203 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 UTP14CQ5TAP6 766 aaKnown RBP23.5■■□□□ 1.35
VPS28-206ENST00000526734 OTOP2Q7RTS6 562 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 CRYGNQ8WXF5 182 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 C22orf23Q9BZE7 217 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 SLC9A2Q9UBY0 812 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 STXBP5LQ9Y2K9 1186 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 EMSYQ7Z589 1322 aa23.5■■□□□ 1.35
VPS28-206ENST00000526734 CKBP12277 381 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 DNAJB2P25686 324 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 SETQ01105 290 aaPredicted RBP23.49■■□□□ 1.35
VPS28-206ENST00000526734 TRIM71Q2Q1W2 868 aaKnown RBP23.49■■□□□ 1.35
VPS28-206ENST00000526734 DEFB128Q7Z7B8 93 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 TNPO1Q92973 898 aaKnown RBP23.49■■□□□ 1.35
VPS28-206ENST00000526734 ATP6V0A1Q93050 837 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 VWCEQ96DN2 955 aa23.49■■□□□ 1.35
VPS28-206ENST00000526734 SMARCAD1Q9H4L7 1026 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms