RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SLFN13Q68D06 897 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 GPBP1Q86WP2 473 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 MED4Q9NPJ6 270 aa23.48■■□□□ 1.35
VPS28-205ENST00000526204 KCNMA1Q12791 1236 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 ASTE1Q2TB18 679 aaPredicted RBP23.47■■□□□ 1.35
VPS28-205ENST00000526204 HERC4Q5GLZ8 1057 aaPredicted RBP23.47■■□□□ 1.35
VPS28-205ENST00000526204 PPP4R3CPQ6ZMV5 832 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 ZNF572Q7Z3I7 529 aaPredicted RBP23.47■■□□□ 1.35
VPS28-205ENST00000526204 FAM184BQ9ULE4 1060 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 STK24Q9Y6E0 443 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 TBX3O15119 743 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 TCP1P17987 556 aaKnown RBP23.47■■□□□ 1.35
VPS28-205ENST00000526204 CYP11B2P19099 503 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 HDLBPQ00341 1268 aaKnown RBP23.47■■□□□ 1.35
VPS28-205ENST00000526204 ZFPM1Q8IX07 1006 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 FAM71BQ8TC56 605 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 IDI2Q9BXS1 227 aa23.47■■□□□ 1.35
VPS28-205ENST00000526204 POTEB3A0JP26 581 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 POTECB2RU33 542 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 ZNF185O15231 689 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 FKBP1AP62942 108 aaKnown RBP23.46■■□□□ 1.35
VPS28-205ENST00000526204 SLC9C1Q4G0N8 1177 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 POTEBQ6S5H4 581 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 TRIM59Q8IWR1 403 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 RNF10Q8N5U6 811 aaKnown RBP23.46■■□□□ 1.35
VPS28-205ENST00000526204 ERMNQ8TAM6 284 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 RUBCNQ92622 972 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 TRIM34Q9BYJ4 488 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 QTRT2Q9H974 415 aaKnown RBP23.46■■□□□ 1.35
VPS28-205ENST00000526204 LUC7LQ9NQ29 371 aaKnown RBP23.46■■□□□ 1.35
VPS28-205ENST00000526204 EMILIN3Q9NT22 766 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.46■■□□□ 1.35
VPS28-205ENST00000526204 CAPN6Q9Y6Q1 641 aa23.46■■□□□ 1.35
VPS28-205ENST00000526204 FRMD3A2A2Y4 597 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 RBAK-RBAKDNI3L0D1 243 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 RAD21O60216 631 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 NPM3O75607 178 aaKnown RBP23.45■■□□□ 1.35
VPS28-205ENST00000526204 EDRF1Q3B7T1 1238 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 CREG2Q8IUH2 290 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 MASTLQ96GX5 879 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 VPS18Q9P253 973 aa23.45■■□□□ 1.35
VPS28-205ENST00000526204 PDE2AO00408 941 aaPredicted RBP23.45■■□□□ 1.34
VPS28-205ENST00000526204 MEIS2O14770 477 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 TRIM37O94972 964 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 MOCS3O95396 460 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 SERPING1P05155 500 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 SFMBT2Q5VUG0 894 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 HGSNATQ68CP4 663 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 TATDN1Q6P1N9 297 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 ZC3H3Q8IXZ2 948 aaKnown RBP23.45■■□□□ 1.34
VPS28-205ENST00000526204 MMGT1Q8N4V1 131 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 SMCR8Q8TEV9 937 aaPredicted RBP23.45■■□□□ 1.34
VPS28-205ENST00000526204 CRYGNQ8WXF5 182 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 AMNQ9BXJ7 453 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 KCTD10Q9H3F6 313 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 MLXIPQ9HAP2 919 aa23.45■■□□□ 1.34
VPS28-205ENST00000526204 LRRIQ3A6PVS8 624 aaPredicted RBP23.44■■□□□ 1.34
VPS28-205ENST00000526204 FOSP01100 380 aaPredicted RBP23.44■■□□□ 1.34
VPS28-205ENST00000526204 KRT18P05783 430 aaKnown RBP23.44■■□□□ 1.34
VPS28-205ENST00000526204 SLC12A3P55017 1021 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 ARHGAP4P98171 946 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 FAM83BQ5T0W9 1011 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 TMEM179Q6ZVK1 233 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 CCDC155Q8N6L0 562 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 SCFD1Q8WVM8 642 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 CCDC102AQ96A19 550 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 TBC1D7Q9P0N9 293 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 HYOU1Q9Y4L1 999 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 MYH7BA7E2Y1 1941 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 ERCC3P19447 782 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 Q4G0T1 1027 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 STRIP1Q5VSL9 837 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 NELFCDQ8IXH7 590 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 NOX5Q96PH1 765 aa23.44■■□□□ 1.34
VPS28-205ENST00000526204 RNF216Q9NWF9 866 aaPredicted RBP23.44■■□□□ 1.34
VPS28-205ENST00000526204 MYH4Q9Y623 1939 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 ANKRD31Q8N7Z5 1873 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 MED24O75448 989 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 NOL4O94818 638 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 AARSP49588 968 aaKnown RBP eCLIP23.43■■□□□ 1.341e-6■■■■■ 36.1
VPS28-205ENST00000526204 ICA1Q05084 483 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 TCP10Q12799 353 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 TDRD12Q587J7 1177 aaKnown RBP23.43■■□□□ 1.34
VPS28-205ENST00000526204 GMCL1P1Q8NEA9 526 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 ETNPPLQ8TBG4 499 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 TSKSQ9UJT2 592 aa23.43■■□□□ 1.34
VPS28-205ENST00000526204 DDTLA6NHG4 134 aaPredicted RBP23.42■■□□□ 1.34
VPS28-205ENST00000526204 ADAM9Q13443 819 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 CCNI2Q6ZMN8 369 aaPredicted RBP23.42■■□□□ 1.34
VPS28-205ENST00000526204 GMCL1Q96IK5 515 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 OSBPL9Q96SU4 736 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 FGFBP2Q9BYJ0 223 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 FAM198AQ9UFP1 575 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 CETN3O15182 167 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 GYS2P54840 703 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 GFPT1Q06210 699 aaPredicted RBP23.42■■□□□ 1.34
VPS28-205ENST00000526204 ARSHQ5FYA8 562 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 KIAA0825Q8IV33 1275 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 COG1Q8WTW3 980 aa23.42■■□□□ 1.34
VPS28-205ENST00000526204 FAM20AQ96MK3 541 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms