RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CISD2Q8N5K1 135 aaKnown RBP6.22□□□□□ -1.41
CD44-220ENST00000525688 GPR101Q96P66 508 aaPredicted RBP6.22□□□□□ -1.41
CD44-220ENST00000525688 MENTQ9BUN1 341 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 BOCQ9BWV1 1114 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 TRIM8Q9BZR9 551 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 SLC6A20Q9NP91 592 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 PDLIM7Q9NR12 457 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 SPTLC3Q9NUV7 552 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 THG1LQ9NWX6 298 aaKnown RBP6.22□□□□□ -1.41
CD44-220ENST00000525688 CHPF2Q9P2E5 772 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 IMPACTQ9P2X3 320 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 RWDD3Q9Y3V2 267 aa6.22□□□□□ -1.41
CD44-220ENST00000525688 SLC12A8A0AV02 714 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 FITM1A5D6W6 292 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 MED26O95402 600 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 KPNA1P52294 538 aaPredicted RBP6.21□□□□□ -1.42
CD44-220ENST00000525688 SETQ01105 290 aaPredicted RBP6.21□□□□□ -1.42
CD44-220ENST00000525688 TTF1Q15361 905 aaPredicted RBP6.21□□□□□ -1.42
CD44-220ENST00000525688 SLC14A2Q15849 920 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 HSP90AB4PQ58FF6 505 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 EMC4Q5J8M3 183 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 CYP4F22Q6NT55 531 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 ZNF574Q6ZN55 896 aaPredicted RBP6.21□□□□□ -1.42
CD44-220ENST00000525688 NFXL1Q6ZNB6 911 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 ARHGAP36Q6ZRI8 547 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 C11orf74Q86VG3 221 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 OXR1Q8N573 874 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 EFHBQ8N7U6 833 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 CNTD1Q8N815 330 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.21□□□□□ -1.42
CD44-220ENST00000525688 PDGFDQ9GZP0 370 aaPredicted RBP6.21□□□□□ -1.42
CD44-220ENST00000525688 SP110Q9HB58 689 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 OXSMQ9NWU1 459 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 SPEF1Q9Y4P9 236 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 EID1Q9Y6B2 187 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 TAF6LQ9Y6J9 622 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 CUX2O14529 1486 aa6.21□□□□□ -1.42
CD44-220ENST00000525688 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.2□□□□□ -1.42
CD44-220ENST00000525688 KRIT1O00522 736 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 NKRFO15226 690 aaKnown RBP eCLIP6.2□□□□□ -1.42
CD44-220ENST00000525688 HPXP02790 462 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 COL6A2P12110 1019 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 SLC6A11P48066 632 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 ITKQ08881 620 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 SYDE2Q5VT97 1194 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 NOSTRINQ8IVI9 506 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 NLGN4XQ8N0W4 816 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 UHMK1Q8TAS1 419 aaKnown RBP6.2□□□□□ -1.42
CD44-220ENST00000525688 SH3RF2Q8TEC5 729 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 COG1Q8WTW3 980 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 PAK6Q9NQU5 681 aaPredicted RBP6.2□□□□□ -1.42
CD44-220ENST00000525688 FBLN5Q9UBX5 448 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 SPO11Q9Y5K1 396 aa6.2□□□□□ -1.42
CD44-220ENST00000525688 THOC2Q8NI27 1593 aaKnown RBP6.19□□□□□ -1.42
CD44-220ENST00000525688 A0A1W2PQ27 194 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 A0A1W2PQ64 194 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 A0A1W2PQC6 194 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 A0A1W2PQD8 194 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 H7C1D1 291 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 MAN2B1O00754 1011 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 MAFGO15525 162 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 CLASP2O75122 1294 aaKnown RBP6.19□□□□□ -1.42
CD44-220ENST00000525688 TADA3O75528 432 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 PRKD3O94806 890 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 MSL3P1P0C860 447 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 ITGB7P26010 798 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 GDNFP39905 211 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 NEK2P51955 445 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 HK2P52789 917 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 EPHA5P54756 1037 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 SESN3P58005 492 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 PHC1P78364 1004 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 MCL1Q07820 350 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 CHRNA2Q15822 529 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 FIGNQ5HY92 759 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 IQSEC1Q6DN90 963 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 PTRH1Q86Y79 214 aaKnown RBP6.19□□□□□ -1.42
CD44-220ENST00000525688 LILRA2Q8N149 483 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 NUP43Q8NFH3 380 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 PIP4K2CQ8TBX8 421 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 USP33Q8TEY7 942 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 PLCD4Q9BRC7 762 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 C19orf73Q9NVV2 129 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 H2AFY2Q9P0M6 372 aaPredicted RBP6.19□□□□□ -1.42
CD44-220ENST00000525688 DSEQ9UL01 958 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 SRPK3Q9UPE1 567 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 NUB1Q9Y5A7 615 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 FANCD2Q9BXW9 1451 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 KIF21AQ7Z4S6 1674 aa6.19□□□□□ -1.42
CD44-220ENST00000525688 DVL2O14641 736 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 GABRDO14764 452 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 TGM5O43548 720 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 MAFKO60675 156 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 EFEMP2O95967 443 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 NTRK1P04629 796 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 GLI4P10075 376 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 PRKCAP17252 672 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 KRT15P19012 456 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 ERVK-21P61565 698 aa6.18□□□□□ -1.42
CD44-220ENST00000525688 IRF9Q00978 393 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms