RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 MAFGO15525 162 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 SORBS3O60504 671 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 LGALS2P05162 132 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 ITGB5P18084 799 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 PFKFB3Q16875 520 aaPredicted RBP34.03■■■■□ 3.04
SYNPO-203ENST00000518872 RUFY3Q7L099 469 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 CYFIP1Q7L576 1253 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 AFAP1L1Q8TED9 768 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 GPR20Q99678 358 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 TM6SF1Q9BZW5 370 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 SEMA6BQ9H3T3 888 aa34.03■■■■□ 3.04
SYNPO-203ENST00000518872 NAP1L2Q9ULW6 460 aaPredicted RBP34.03■■■■□ 3.04
SYNPO-203ENST00000518872 CENPBP07199 599 aaPredicted RBP34.02■■■■□ 3.04
SYNPO-203ENST00000518872 TTYH1Q9H313 450 aaPredicted RBP34.02■■■■□ 3.04
SYNPO-203ENST00000518872 CXXC1Q9P0U4 656 aaPredicted RBP34.02■■■■□ 3.04
SYNPO-203ENST00000518872 H3BRB1 525 aa34.01■■■■□ 3.03
SYNPO-203ENST00000518872 DNAJB2P25686 324 aa34.01■■■■□ 3.03
SYNPO-203ENST00000518872 HOXC8P31273 242 aa34.01■■■■□ 3.03
SYNPO-203ENST00000518872 ADCY7P51828 1080 aa34.01■■■■□ 3.03
SYNPO-203ENST00000518872 AP3B2Q13367 1082 aa34.01■■■■□ 3.03
SYNPO-203ENST00000518872 DHX38Q92620 1227 aaKnown RBP34.01■■■■□ 3.03
SYNPO-203ENST00000518872 TUT1Q9H6E5 874 aaKnown RBP34.01■■■■□ 3.03
SYNPO-203ENST00000518872 PARNO95453 639 aaKnown RBP34■■■■□ 3.03
SYNPO-203ENST00000518872 KCNA2P16389 499 aa34■■■■□ 3.03
SYNPO-203ENST00000518872 CLK2P49760 499 aaKnown RBP34■■■■□ 3.03
SYNPO-203ENST00000518872 PTK7Q13308 1070 aa34■■■■□ 3.03
SYNPO-203ENST00000518872 OTOP2Q7RTS6 562 aa34■■■■□ 3.03
SYNPO-203ENST00000518872 GBF1Q92538 1859 aa34■■■■□ 3.03
SYNPO-203ENST00000518872 JADE2Q9NQC1 790 aa34■■■■□ 3.03
SYNPO-203ENST00000518872 ESYT2A0FGR8 921 aa33.99■■■■□ 3.03
SYNPO-203ENST00000518872 SMCO2A6NFE2 343 aa33.99■■■■□ 3.03
SYNPO-203ENST00000518872 PRPF3O43395 683 aaKnown RBP33.99■■■■□ 3.03
SYNPO-203ENST00000518872 SCG2P13521 617 aa33.99■■■■□ 3.03
SYNPO-203ENST00000518872 NTRK3Q16288 839 aa33.99■■■■□ 3.03
SYNPO-203ENST00000518872 KAT6AQ92794 2004 aa33.99■■■■□ 3.03
SYNPO-203ENST00000518872 MTMR1Q13613 665 aa33.98■■■■□ 3.03
SYNPO-203ENST00000518872 MYO9BQ13459 2157 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 ATP9AO75110 1047 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 SELPP16109 830 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 PKN1Q16512 942 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 FAM161BQ96MY7 647 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 RNF26Q9BY78 433 aaPredicted RBP33.97■■■■□ 3.03
SYNPO-203ENST00000518872 ANO3Q9BYT9 981 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 PBX4Q9BYU1 374 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 CYP46A1Q9Y6A2 500 aa33.97■■■■□ 3.03
SYNPO-203ENST00000518872 PDIA3P30101 505 aaKnown RBP33.96■■■■□ 3.03
SYNPO-203ENST00000518872 TOB2Q14106 344 aaPredicted RBP33.96■■■■□ 3.03
SYNPO-203ENST00000518872 TRIM71Q2Q1W2 868 aaKnown RBP33.96■■■■□ 3.03
SYNPO-203ENST00000518872 DEFB128Q7Z7B8 93 aa33.96■■■■□ 3.03
SYNPO-203ENST00000518872 CCDC12Q8WUD4 166 aaPredicted RBP33.96■■■■□ 3.03
SYNPO-203ENST00000518872 MXRA8Q9BRK3 442 aa33.96■■■■□ 3.03
SYNPO-203ENST00000518872 ZMYND12Q9H0C1 365 aa33.96■■■■□ 3.03
SYNPO-203ENST00000518872 CDH23Q9H251 3354 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 CKBP12277 381 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 ACTN1P12814 892 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 IFNAR1P17181 557 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 SREBF1P36956 1147 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 HIC1Q14526 733 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 RAB30Q15771 203 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 LRRC8DQ7L1W4 858 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 SERINC5Q86VE9 423 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 TIFAQ96CG3 184 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 ZNF215Q9UL58 517 aaPredicted RBP33.95■■■■□ 3.03
SYNPO-203ENST00000518872 SLC4A7Q9Y6M7 1214 aa33.95■■■■□ 3.03
SYNPO-203ENST00000518872 GRXCR1A8MXD5 290 aa33.94■■■■□ 3.02
SYNPO-203ENST00000518872 MCTP2Q6DN12 878 aa33.94■■■■□ 3.02
SYNPO-203ENST00000518872 CDX2Q99626 313 aaPredicted RBP33.94■■■■□ 3.02
SYNPO-203ENST00000518872 SMIM10L2AP0DMW4 78 aa33.93■■■■□ 3.02
SYNPO-203ENST00000518872 SMIM10L2BP0DMW5 78 aa33.93■■■■□ 3.02
SYNPO-203ENST00000518872 KCNH7Q9NS40 1196 aa33.93■■■■□ 3.02
SYNPO-203ENST00000518872 TELO2Q9Y4R8 837 aa33.93■■■■□ 3.02
SYNPO-203ENST00000518872 C17orf102A2RUQ5 167 aa33.92■■■■□ 3.02
SYNPO-203ENST00000518872 CXCL10P02778 98 aa33.92■■■■□ 3.02
SYNPO-203ENST00000518872 ZNF200P98182 395 aaPredicted RBP33.92■■■■□ 3.02
SYNPO-203ENST00000518872 GPNMBQ14956 572 aa33.92■■■■□ 3.02
SYNPO-203ENST00000518872 CEP55Q53EZ4 464 aa33.92■■■■□ 3.02
SYNPO-203ENST00000518872 SEPT1Q8WYJ6 367 aa33.92■■■■□ 3.02
SYNPO-203ENST00000518872 ZNF274Q96GC6 653 aaPredicted RBP33.92■■■■□ 3.02
SYNPO-203ENST00000518872 NFASCO94856 1347 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 BAIAP3O94812 1187 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 TCF7P36402 384 aaPredicted RBP33.91■■■■□ 3.02
SYNPO-203ENST00000518872 PBX2P40425 430 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 AKAP17AQ02040 695 aaKnown RBP33.91■■■■□ 3.02
SYNPO-203ENST00000518872 TRAF7Q6Q0C0 670 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 NIPA1Q7RTP0 329 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 CRYGNQ8WXF5 182 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 WNT8BQ93098 351 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 PHKBQ93100 1093 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 PGBD1Q96JS3 809 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 RNPEPQ9H4A4 650 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 ZNF576Q9H609 170 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 C6orf50Q9HD87 102 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 MSRAQ9UJ68 235 aa33.91■■■■□ 3.02
SYNPO-203ENST00000518872 GSTTP1A0A1W2PQM5 241 aa33.9■■■■□ 3.02
SYNPO-203ENST00000518872 TRIM50Q86XT4 487 aa33.9■■■■□ 3.02
SYNPO-203ENST00000518872 ATP6V0A1Q93050 837 aa33.9■■■■□ 3.02
SYNPO-203ENST00000518872 TMEM260Q9NX78 707 aa33.9■■■■□ 3.02
SYNPO-203ENST00000518872 ZBBXA8MT70 800 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 MEIS1O00470 390 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 GNAT1P11488 350 aa33.89■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms