RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TAP1Q03518 808 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 CNGB1Q14028 1251 aaPredicted RBP0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 PHF19Q5T6S3 580 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 HDGFL1Q5TGJ6 251 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 C18orf65Q6ZTR6 163 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 BRAPQ7Z569 592 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 FAM126BQ8IXS8 530 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 TMEM176AQ96HP8 235 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 TRMOQ9BU70 441 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 KIAA1683Q9H0B3 1180 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 METTL14Q9HCE5 456 aaKnown RBP0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 CHST7Q9NS84 486 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 WASF3Q9UPY6 502 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 SAMM50Q9Y512 469 aa0.69□□□□□ -2.3
RNU6-539P-201ENST00000516665 ZNF804BA4D1E1 1349 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 RTL8CO15255 209 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 BRINP1O60477 761 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 PDE6AP16499 860 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 L1CAMP32004 1257 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 SLC6A11P48066 632 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 NOVP48745 357 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 LINC00205P59089 165 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 NKX3-2P78367 333 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 USP10Q14694 798 aaKnown RBP0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 MTX3Q5HYI7 312 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 TPTE2Q6XPS3 522 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 LZTR1Q8N653 840 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 HIRIP3Q9BW71 556 aaPredicted RBP0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 SYBUQ9NX95 663 aa0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 DIS3Q9Y2L1 958 aaKnown RBP0.68□□□□□ -2.3
RNU6-539P-201ENST00000516665 GTPBP1O00178 669 aaKnown RBP0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 PPP1R11O60927 126 aaPredicted RBP0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 MOSPD3O75425 235 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 FBXO24O75426 580 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 NTRK1P04629 796 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 USP5P45974 858 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 THBS3P49746 956 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 SEC24CP53992 1094 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 E2F1Q01094 437 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 FKBP15Q5T1M5 1219 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 CYP2R1Q6VVX0 501 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 ZNF788Q6ZQV5 615 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 ADGRE4PQ86SQ3 457 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 CXorf67Q86X51 503 aaPredicted RBP0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 RFX6Q8HWS3 928 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 AEBP1Q8IUX7 1158 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 GPR135Q8IZ08 494 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 C16orf92Q96LL3 132 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 KATNBL1Q9H079 304 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 SEMA4GQ9NTN9 838 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 TRPS1Q9UHF7 1281 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 NR2E1Q9Y466 385 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 KIF26BQ2KJY2 2108 aa0.67□□□□□ -2.3
RNU6-539P-201ENST00000516665 FCGBPQ9Y6R7 5405 aaPredicted RBP0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CENPVL1A0A0U1RR11 272 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 TNFRSF13BO14836 293 aaPredicted RBP0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 FGF10O15520 208 aaPredicted RBP0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 SGSM2O43147 1006 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 FZD6O60353 706 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 LPXNO60711 386 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 RHDQ02161 417 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 ORC1Q13415 861 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CHRNA2Q15822 529 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 RABL3Q5HYI8 236 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 ZNF626Q68DY1 528 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 ZNF662Q6ZS27 426 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CMTR2Q8IYT2 770 aaKnown RBP0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 FNBP4Q8N3X1 1017 aaPredicted RBP0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 HELQQ8TDG4 1101 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CFHR4Q92496 578 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 WRNIP1Q96S55 665 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 MTA3Q9BTC8 594 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 SLC12A9Q9BXP2 914 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 SERHL2Q9H4I8 314 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 ADAM30Q9UKF2 790 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CBLCQ9ULV8 474 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 CYP8B1Q9UNU6 501 aa0.66□□□□□ -2.3
RNU6-539P-201ENST00000516665 IGKV3-20P01619 116 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 MAN2A2P49641 1150 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 RRADP55042 308 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 TUBA4AP68366 448 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 DDR1Q08345 913 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 EIF2B5Q13144 721 aaKnown RBP0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 AAMPQ13685 434 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 TBR1Q16650 682 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 TIGD2Q4W5G0 525 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 PCNX4Q63HM2 1172 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 CCDC62Q6P9F0 684 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 TMC5Q6UXY8 1006 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 BNC2Q6ZN30 1099 aaPredicted RBP0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 ZNF329Q86UD4 541 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 REXO1L1PQ8IX06 675 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 LINC00476Q8WZB0 136 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 CAVIN3Q969G5 261 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 RPL36ALQ969Q0 106 aaKnown RBP0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 WDR11Q9BZH6 1224 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 KIAA1586Q9HCI6 787 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 ANLNQ9NQW6 1124 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 GFOD1Q9NXC2 390 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 ANKFY1Q9P2R3 1169 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms