RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 C20orf173Q96LM9 149 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 FERD3LQ96RJ6 166 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 PLCD4Q9BRC7 762 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 MKRN2Q9H000 416 aaKnown RBP7.05□□□□□ -1.28
NUP54-218ENST00000515460 ANTXR1Q9H6X2 564 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 PARD6AQ9NPB6 346 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 THRAP3Q9Y2W1 955 aaKnown RBP7.05□□□□□ -1.28
NUP54-218ENST00000515460 PCDHGB7Q9Y5F8 929 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 RANBP2P49792 3224 aaKnown RBP7.05□□□□□ -1.28
NUP54-218ENST00000515460 ALS2Q96Q42 1657 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 CPDO75976 1380 aa7.05□□□□□ -1.28
NUP54-218ENST00000515460 RFXAPO00287 272 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 SIGLEC6O43699 453 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 PI3P19957 117 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 BUD31P41223 144 aaPredicted RBP7.04□□□□□ -1.28
NUP54-218ENST00000515460 KIR3DS1Q14943 382 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 TEX2Q8IWB9 1127 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 DHRS1Q96LJ7 313 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 CHST7Q9NS84 486 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 MBD1Q9UIS9 605 aaPredicted RBP7.04□□□□□ -1.28
NUP54-218ENST00000515460 FBXL21Q9UKT6 434 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 ZNRF3Q9ULT6 936 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 IRAK3Q9Y616 596 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 PKD1L2Q7Z442 2459 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 QSER1Q2KHR3 1735 aa7.04□□□□□ -1.28
NUP54-218ENST00000515460 CENPJQ9HC77 1338 aaPredicted RBP7.03□□□□□ -1.28
NUP54-218ENST00000515460 CEP290O15078 2479 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 LRRC37A3O60309 1634 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 FAM86C2PA6NEL3 165 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 RECKO95980 971 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 VIPR1P32241 457 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 EPHB3P54753 998 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 CALD1Q05682 793 aaKnown RBP7.03□□□□□ -1.28
NUP54-218ENST00000515460 DEFB115Q30KQ5 88 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 INTS3Q68E01 1043 aaKnown RBP7.03□□□□□ -1.28
NUP54-218ENST00000515460 ZNF654Q8IZM8 581 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 SPATA32Q96LK8 384 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 SLC6A18Q96N87 628 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 CRTAC1Q9NQ79 661 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 GFOD1Q9NXC2 390 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 LTBP1Q14766 1721 aa7.03□□□□□ -1.28
NUP54-218ENST00000515460 PNLIPP16233 465 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 COL9A2Q14055 689 aaPredicted RBP7.02□□□□□ -1.29
NUP54-218ENST00000515460 TMEM192Q8IY95 271 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 FAM43AQ8N2R8 423 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 TAB3Q8N5C8 712 aaPredicted RBP7.02□□□□□ -1.29
NUP54-218ENST00000515460 SIGLEC10Q96LC7 697 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 TM9SF2Q99805 663 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 CDADC1Q9BWV3 514 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 CNTD2Q9H8S5 307 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 DDX41Q9UJV9 622 aaKnown RBP7.02□□□□□ -1.29
NUP54-218ENST00000515460 GPR55Q9Y2T6 319 aaPredicted RBP7.02□□□□□ -1.29
NUP54-218ENST00000515460 PCDHB12Q9Y5F1 795 aa7.02□□□□□ -1.29
NUP54-218ENST00000515460 PPIP5K1Q6PFW1 1433 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 A0A0G2JLW4 131 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
NUP54-218ENST00000515460 FBXW10Q5XX13 1052 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 ARHGEF25Q86VW2 580 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 RELTQ969Z4 430 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 TNFRSF10DQ9UBN6 386 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 TAF6LQ9Y6J9 622 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 PASKQ96RG2 1323 aa7.01□□□□□ -1.29
NUP54-218ENST00000515460 BRD4O60885 1362 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 RASSF10A6NK89 507 aa7□□□□□ -1.29
NUP54-218ENST00000515460 FADS2P1A8MWK0 482 aa7□□□□□ -1.29
NUP54-218ENST00000515460 TRIM13O60858 407 aa7□□□□□ -1.29
NUP54-218ENST00000515460 CNGB1Q14028 1251 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 HSP90AA2PQ14568 343 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 VMACQ2NL98 169 aa7□□□□□ -1.29
NUP54-218ENST00000515460 HSF5Q4G112 596 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 GALNT18Q6P9A2 607 aa7□□□□□ -1.29
NUP54-218ENST00000515460 TOM1L2Q6ZVM7 507 aa7□□□□□ -1.29
NUP54-218ENST00000515460 TMEM151BQ8IW70 566 aa7□□□□□ -1.29
NUP54-218ENST00000515460 SMARCC1Q92922 1105 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 MRRFQ96E11 262 aaKnown RBP7□□□□□ -1.29
NUP54-218ENST00000515460 FCRL2Q96LA5 508 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 SLC9A7Q96T83 725 aa7□□□□□ -1.29
NUP54-218ENST00000515460 PRR13Q9NZ81 148 aa7□□□□□ -1.29
NUP54-218ENST00000515460 SUCOQ9UBS9 1254 aaKnown RBP7□□□□□ -1.29
NUP54-218ENST00000515460 CRYBG1Q9Y4K1 1723 aa7□□□□□ -1.29
NUP54-218ENST00000515460 N4BP2Q86UW6 1770 aaPredicted RBP7□□□□□ -1.29
NUP54-218ENST00000515460 COL5A2P05997 1499 aaPredicted RBP6.99□□□□□ -1.29
NUP54-218ENST00000515460 MUC3AQ02505 3323 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 WTIPA6NIX2 430 aaPredicted RBP6.99□□□□□ -1.29
NUP54-218ENST00000515460 N4BP3O15049 544 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 MPOP05164 745 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 PRKCAP17252 672 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 CANXP27824 592 aaKnown RBP6.99□□□□□ -1.29
NUP54-218ENST00000515460 ARL4AP40617 200 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 CTSKP43235 329 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 RACK1P63244 317 aaKnown RBP6.99□□□□□ -1.29
NUP54-218ENST00000515460 AUHQ13825 339 aaKnown RBP6.99□□□□□ -1.29
NUP54-218ENST00000515460 KCNC2Q96PR1 638 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 SIN3AQ96ST3 1273 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 CRBNQ96SW2 442 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 CRB1P82279 1406 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 WASHC2AQ641Q2 1341 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 TTC21BQ7Z4L5 1316 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 WDR17Q8IZU2 1322 aa6.99□□□□□ -1.29
NUP54-218ENST00000515460 GLTPD2A6NH11 291 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms