RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MCM3P25205 808 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 SLC12A3P55017 1021 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 HERC4Q5GLZ8 1057 aaPredicted RBP16.44■□□□□ 0.22
NUP54-217ENST00000514987 ZC3H3Q8IXZ2 948 aaKnown RBP16.44■□□□□ 0.22
NUP54-217ENST00000514987 CSRNP1Q96S65 589 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 EHMT1Q9H9B1 1298 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 SAR1BQ9Y6B6 198 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 POTEB3A0JP26 581 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 POTECB2RU33 542 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 PPIP5K2O43314 1243 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 ABL1P00519 1130 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 SPIRE1Q08AE8 756 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 LRRC41Q15345 812 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 PRR16Q569H4 304 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 POTEBQ6S5H4 581 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 CACNA2D4Q7Z3S7 1137 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 MSL3Q8N5Y2 521 aaKnown RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 SYT2Q8N9I0 419 aaPredicted RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 POLR3CQ9BUI4 534 aaPredicted RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.43■□□□□ 0.22
NUP54-217ENST00000514987 GOPCQ9HD26 462 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 LUC7LQ9NQ29 371 aaKnown RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 PRDM10Q9NQV6 1147 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 EMILIN3Q9NT22 766 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 CEP72Q9P209 647 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 HDAC9Q9UKV0 1011 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 SSU72P8A0A1W2PR75 194 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 MED24O75448 989 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 MAPK8IP2Q13387 824 aaPredicted RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 IQCEQ6IPM2 695 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 PDXDC1Q6P996 788 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 TRIM58Q8NG06 486 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 FAM151AQ8WW52 585 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 SECISBP2LQ93073 1101 aaKnown RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 PRMT6Q96LA8 375 aaPredicted RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 TANGO6Q9C0B7 1094 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 DEF6Q9H4E7 631 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 FAM207AQ9NSI2 230 aaPredicted RBP16.43■□□□□ 0.22
NUP54-217ENST00000514987 PRR12Q9ULL5 1215 aa16.43■□□□□ 0.22
NUP54-217ENST00000514987 TNS1Q9HBL0 1735 aaKnown RBP16.42■□□□□ 0.22
NUP54-217ENST00000514987 CETN3O15182 167 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 PLA2G6O60733 806 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 TACC1O75410 805 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 TBC1D8O95759 1140 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 SLURP2P0DP57 97 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 CHRNA5P30532 468 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 ZNF76P36508 570 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 STAT2P52630 851 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 SHROOM1Q2M3G4 852 aaPredicted RBP16.42■□□□□ 0.22
NUP54-217ENST00000514987 USH1GQ495M9 461 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 FKBP1CQ5VVH2 108 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 NCAPH2Q6IBW4 605 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 RSBN1LQ6PCB5 846 aaPredicted RBP16.42■□□□□ 0.22
NUP54-217ENST00000514987 CATSPER3Q86XQ3 398 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 TRIM59Q8IWR1 403 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 RTKN2Q8IZC4 609 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 CHURC1Q8WUH1 139 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 LENG9Q96B70 501 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 IFIH1Q9BYX4 1025 aaKnown RBP16.42■□□□□ 0.22
NUP54-217ENST00000514987 VPS33BQ9H267 617 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 KCTD10Q9H3F6 313 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 SH2D4AQ9H788 454 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 ZSWIM4Q9H7M6 989 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 ANKZF1Q9H8Y5 726 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 ZNF219Q9P2Y4 722 aaPredicted RBP16.42■□□□□ 0.22
NUP54-217ENST00000514987 TRIM10Q9UDY6 481 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 TMX2Q9Y320 296 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 PCDHA13Q9Y5I0 950 aa16.42■□□□□ 0.22
NUP54-217ENST00000514987 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.42■□□□□ 0.22
NUP54-217ENST00000514987 ATAD5Q96QE3 1844 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 AKR1B10O60218 316 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 PRLRP16471 622 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 MUTP22033 750 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 PLA2G4AP47712 749 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 KIF11P52732 1056 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 GPS2Q13227 327 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 LONRF2Q1L5Z9 754 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 ARSHQ5FYA8 562 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 RRAGAQ7L523 313 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 SCFD1Q8WVM8 642 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 BAP1Q92560 729 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 GJA10Q969M2 543 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 ARHGAP20Q9P2F6 1191 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 TRAF3IP3Q9Y228 551 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 JRKLQ9Y4A0 524 aa16.41■□□□□ 0.22
NUP54-217ENST00000514987 POTEFA5A3E0 1075 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 SPDYE2BA6NHP3 402 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 LRRC53A6NM62 1247 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 PJA2O43164 708 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 POTEIP0CG38 1075 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 SPDYE6P0CI01 402 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 GAP43P17677 238 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 EIF4A3P38919 411 aaKnown RBP16.4■□□□□ 0.22
NUP54-217ENST00000514987 STAT3P40763 770 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 GIT2Q14161 759 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 DLGAP5Q15398 846 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 TERF2Q15554 542 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 SLC9C1Q4G0N8 1177 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 WDR93Q6P2C0 686 aa16.4■□□□□ 0.22
NUP54-217ENST00000514987 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms