RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CTNND1O60716 968 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 COASYQ13057 564 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 WDR44Q5JSH3 913 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 C6orf163Q5TEZ5 329 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 TEKT1Q969V4 418 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 SYNCQ9H7C4 482 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 ARHGEF10LQ9HCE6 1279 aa9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 INTS9Q9NV88 658 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 SRP68Q9UHB9 627 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 PACSIN2Q9UNF0 486 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 PDS5AQ29RF7 1337 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-216ENST00000512820 PNMA6FA0A0J9YX94 578 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 PSMC2P35998 433 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 IFNAR2P48551 515 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 MDM2Q00987 491 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 ZYXQ15942 572 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 WDR93Q6P2C0 686 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 TRAPPC11Q7Z392 1133 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 OGFOD1Q8N543 542 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 GPR101Q96P66 508 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 PRM3Q9NNZ6 103 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 INTS13Q9NVM9 706 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 ANAPC4Q9UJX5 808 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM237AA0A1B0GTK4 181 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 LRRIQ3A6PVS8 624 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 PRPF6O94906 941 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 GAS8O95995 478 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 BMP6P22004 513 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 PPP4R3CPQ6ZMV5 832 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 CEP63Q96MT8 703 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 FNBP1Q96RU3 617 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 C7orf25Q9BPX7 421 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 TCHPQ9BT92 498 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 SH2D4AQ9H788 454 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 HOMER2Q9NSB8 354 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 SMARCAL1Q9NZC9 954 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 EXOC7Q9UPT5 735 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 E9PMD0 336 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 CLTAP09496 248 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 STX2P32856 288 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 MESDQ14696 234 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 CERKLQ49MI3 558 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 AMNQ9BXJ7 453 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 SERPINB13Q9UIV8 391 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 TCRBV5S4A2TA0A5A2 114 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 TDP2O95551 362 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 FOSP01100 380 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 SP4Q02446 784 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 KCNH2Q12809 1159 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 SF3B2Q13435 895 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 NKX1-1Q15270 411 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 LIN9Q5TKA1 542 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 C12orf60Q5U649 245 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 MS4A14Q96JA4 679 aa9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 JPH2Q9BR39 696 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC188H7C350 402 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 ICA1Q05084 483 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 ODR4Q5SWX8 454 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 TMC4Q7Z404 712 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PPP1R14CQ8TAE6 165 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 CEP95Q96GE4 821 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 FMO2Q99518 471 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 DNAJC7Q99615 494 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 EDEM3Q9BZQ6 932 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 USTQ9Y2C2 406 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 STK38LQ9Y2H1 464 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 GRID2IPA4D2P6 1211 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 LRRN2O75325 713 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 VPS41P49754 854 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 MYL7Q01449 175 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 ORC2Q13416 577 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 SEC23AQ15436 765 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 TMED8Q6PL24 325 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 CEP128Q6ZU80 1094 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 SH2D3CQ8N5H7 860 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PTPN22Q9Y2R2 807 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 K7ENM7 598 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 FGGP02679 453 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 SLC8A1P32418 973 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 EARS2Q5JPH6 523 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 ARMC9Q7Z3E5 817 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC63Q8NA47 563 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 RUBCNQ92622 972 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 A0A087X0B3 334 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 TFRCP02786 760 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 FGFR2P21802 821 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 GBP1P32455 592 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PKN1Q16512 942 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PDXDC2PQ6P474 469 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PPM1KQ8N3J5 372 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 MAIP1Q8WWC4 291 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC17Q96LX7 622 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 CNOT10Q9H9A5 744 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 ACTR5Q9H9F9 607 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 KANSL2Q9H9L4 492 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 RAB21Q9UL25 225 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 JCADQ9P266 1359 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 PASKQ96RG2 1323 aa9.16□□□□□ -0.94
LIMCH1-216ENST00000512820 GAP43P17677 238 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 KRT15P19012 456 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms