RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 ALG13Q9NP73 1137 aaKnown RBP13.56□□□□□ -0.24
RNF4-216ENST00000511859 MRVI1Q9Y6F6 885 aa13.56□□□□□ -0.24
RNF4-216ENST00000511859 C17orf102A2RUQ5 167 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 PROB1E7EW31 1015 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 AVPR2P30518 371 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 NDUFV1P49821 464 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 ZNF543Q08ER8 600 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 GPATCH4Q5T3I0 446 aaKnown RBP13.55□□□□□ -0.24
RNF4-216ENST00000511859 ARHGEF16Q5VV41 709 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 MYSM1Q5VVJ2 828 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 ERMP1Q7Z2K6 904 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 TBC1D5Q92609 795 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 FAM86C1Q9NVL1 165 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 TTC3P53804 2025 aa13.55□□□□□ -0.24
RNF4-216ENST00000511859 MYH6P13533 1939 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 MMP1P03956 469 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 LINC00271P0C7V0 271 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 HOXC8P31273 242 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 COASYQ13057 564 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 ZMYM1Q5SVZ6 1142 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 SMRP1Q8NCR6 262 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 SPATA33Q96N06 139 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 C16orf70Q9BSU1 422 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 MYO10Q9HD67 2058 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 ABCB11O95342 1321 aa13.54□□□□□ -0.24
RNF4-216ENST00000511859 H3BRB1 525 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 LINC01565O15544 149 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 NR3C2P08235 984 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 TGFB3P10600 412 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 GNAT1P11488 350 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 GTF2F1P35269 517 aaKnown RBP eCLIP13.53□□□□□ -0.249e-9■■■■■ 35.7
RNF4-216ENST00000511859 HSDL1Q3SXM5 330 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 NAALADL2Q58DX5 795 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 CELF3Q5SZQ8 465 aaKnown RBP13.53□□□□□ -0.24
RNF4-216ENST00000511859 EFHBQ8N7U6 833 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 P2RX5Q93086 422 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 ASIC4Q96FT7 647 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 PHF7Q9BWX1 381 aaPredicted RBP13.53□□□□□ -0.24
RNF4-216ENST00000511859 RNPEPQ9H4A4 650 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 TUT1Q9H6E5 874 aaKnown RBP13.53□□□□□ -0.24
RNF4-216ENST00000511859 TOMM22Q9NS69 142 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 COL20A1Q9P218 1284 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 PLAGL2Q9UPG8 496 aa13.53□□□□□ -0.24
RNF4-216ENST00000511859 WDR87Q6ZQQ6 2873 aa13.52□□□□□ -0.24
RNF4-216ENST00000511859 TREHO43280 583 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 HSPD1P10809 573 aaKnown RBP13.52□□□□□ -0.25
RNF4-216ENST00000511859 RRP1P56182 461 aaKnown RBP13.52□□□□□ -0.25
RNF4-216ENST00000511859 CAMK1Q14012 370 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 ALX1Q15699 326 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 PXMP2Q9NR77 195 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 CLEC1BQ9P126 229 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 MRPL11Q9Y3B7 192 aaKnown RBP13.52□□□□□ -0.25
RNF4-216ENST00000511859 PLXNA3P51805 1871 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 ADGRA3Q8IWK6 1321 aa13.52□□□□□ -0.25
RNF4-216ENST00000511859 H0Y858 1186 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 RBAK-RBAKDNI3L0D1 243 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 FOXP2O15409 715 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 SMIM10L2AP0DMW4 78 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 SMIM10L2BP0DMW5 78 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 EIF2AK2P19525 551 aaKnown RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 ICAM3P32942 547 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 VCPP55072 806 aaKnown RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 BTG3Q14201 252 aaPredicted RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 FAM26DQ5JW98 314 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 TSHZ3Q63HK5 1081 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 ZNF689Q96CS4 500 aaPredicted RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 FSD1Q9BTV5 496 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 USP26Q9BXU7 913 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 OSBPL7Q9BZF2 842 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 RC3H2Q9HBD1 1191 aaKnown RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 TLR9Q9NR96 1032 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 MAP3K20Q9NYL2 800 aaKnown RBP13.51□□□□□ -0.25
RNF4-216ENST00000511859 TTC41PQ6P2S7 1318 aa13.51□□□□□ -0.25
RNF4-216ENST00000511859 GVINP1Q7Z2Y8 2422 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 GGPS1O95749 300 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 CTSHP09668 335 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 ATF7P17544 494 aaPredicted RBP13.5□□□□□ -0.25
RNF4-216ENST00000511859 CDC37Q16543 378 aaPredicted RBP13.5□□□□□ -0.25
RNF4-216ENST00000511859 RRP12Q5JTH9 1297 aaKnown RBP13.5□□□□□ -0.25
RNF4-216ENST00000511859 UBA5Q9GZZ9 404 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 MLXIPQ9HAP2 919 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 TRPC6Q9Y210 931 aa13.5□□□□□ -0.25
RNF4-216ENST00000511859 USP15Q9Y4E8 981 aaPredicted RBP13.5□□□□□ -0.25
RNF4-216ENST00000511859 ENPP3O14638 875 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 GALR2O43603 387 aaPredicted RBP13.49□□□□□ -0.25
RNF4-216ENST00000511859 RGS20O76081 388 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 PCP11498 1178 aaKnown RBP13.49□□□□□ -0.25
RNF4-216ENST00000511859 SPPL3Q8TCT6 385 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 RPGRIP1Q96KN7 1286 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 RIPOR3Q96MK2 946 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 DCTPP1Q9H773 170 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 CACNA1BQ00975 2339 aa13.49□□□□□ -0.25
RNF4-216ENST00000511859 FSD2A1L4K1 749 aa13.48□□□□□ -0.25
RNF4-216ENST00000511859 DGKIO75912 1065 aa13.48□□□□□ -0.25
RNF4-216ENST00000511859 CFBP00751 764 aa13.48□□□□□ -0.25
RNF4-216ENST00000511859 GOLGA8HP0CJ92 632 aa13.48□□□□□ -0.25
RNF4-216ENST00000511859 MYCLP12524 364 aaPredicted RBP13.48□□□□□ -0.25
RNF4-216ENST00000511859 NBL1P41271 181 aa13.48□□□□□ -0.25
RNF4-216ENST00000511859 SP2Q02086 613 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms