RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ASNA1O43681 348 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CCDC22O60826 627 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 APOA4P06727 396 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 HPDP32754 393 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 GNAQP50148 359 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CORO7P57737 925 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 DR1Q01658 176 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SSRP1Q08945 709 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 EFR3AQ14156 821 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 GEN1Q17RS7 908 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CWF19L2Q2TBE0 894 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 RABL6Q3YEC7 729 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 SLC10A5Q5PT55 438 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 HIBCHQ6NVY1 386 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 TCAIMQ8N3R3 496 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 DHX58Q96C10 678 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 LSM14BQ9BX40 385 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 CLSTN2Q9H4D0 955 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 NOL6Q9H6R4 1146 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 RIC8AQ9NPQ8 531 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TRIM33Q9UPN9 1127 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 MAST1Q9Y2H9 1570 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 V9GYQ6 96 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 RTL1A6NKG5 1358 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 DAPK1P53355 1430 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PRR23D1E9PI22 279 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 ANGPT2O15123 496 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 MEFVO15553 781 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 KCNQ3O43525 872 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 GSNP06396 782 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PRR23D2P0DMB1 279 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 PECAM1P16284 738 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 IL12RB1P42701 662 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 MAGEA8P43361 318 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CSE1LP55060 971 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 RPL19P84098 196 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 PDCLQ13371 301 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 KRT81Q14533 505 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 LONRF2Q1L5Z9 754 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SLC9C1Q4G0N8 1177 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TMC5Q6UXY8 1006 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SETD3Q86TU7 594 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 ZGPATQ8N5A5 531 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 RNF169Q8NCN4 708 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 NELFBQ8WX92 580 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 LPIN2Q92539 896 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 BRF1Q92994 677 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CSRNP1Q96S65 589 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 BTBD7Q9P203 1132 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 STX18Q9P2W9 335 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 PIK3C2BO00750 1634 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 ADCY6O43306 1168 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 ABCB1P08183 1280 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 FAM200BP0CF97 657 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PTGS1P23219 599 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PPARGP37231 505 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 CYP4A11Q02928 519 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 IFT88Q13099 833 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 RPS6KA1Q15418 735 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CCDC142Q17RM4 750 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 C15orf59Q2T9L4 293 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 C2CD6Q53TS8 623 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 C1orf141Q5JVX7 400 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CYP4A22Q5TCH4 519 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 KHDRBS2Q5VWX1 349 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 C11orf88Q6PI97 169 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SAMD1Q6SPF0 538 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 BARGINQ6ZT62 677 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CDH24Q86UP0 819 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SYCP3Q8IZU3 236 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 GAS2L2Q8NHY3 880 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 MGARPQ8TDB4 240 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SYTL5Q8TDW5 730 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 CDKL2Q92772 493 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PBKQ96KB5 322 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 RILPQ96NA2 401 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 DACH2Q96NX9 599 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TEX13AQ9BXU3 409 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 PAPOLBQ9NRJ5 636 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 UVRAGQ9P2Y5 699 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TRAF3IP3Q9Y228 551 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 LMTK2Q8IWU2 1503 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 PASKQ96RG2 1323 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TLDC2A0PJX2 215 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 F8W8V4 182 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 KPNA3O00505 521 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 DAPK3O43293 454 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CA12O43570 354 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CCDC166P0CW27 439 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 HOXB6P17509 224 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 RGS19P49795 217 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 ATP8B2P98198 1209 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TBL3Q12788 808 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 PPP2R5BQ15173 497 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 GNPTABQ3T906 1256 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 COL13A1Q5TAT6 717 aaPredicted RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 KRT79Q5XKE5 535 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 KAZNQ674X7 775 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 LRIG3Q6UXM1 1119 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 CHCHD4Q8N4Q1 142 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms