RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 SEPT2Q15019 361 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 UAP1Q16222 522 aaPredicted RBP19.51■□□□□ 0.71
NUP54-205ENST00000507257 IFI16Q16666 785 aaKnown RBP19.51■□□□□ 0.71
NUP54-205ENST00000507257 SLC35G1Q2M3R5 365 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 PARP9Q8IXQ6 854 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 TAF4BQ92750 862 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 CEP63Q96MT8 703 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 OSBPL7Q9BZF2 842 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 PALM3A6NDB9 673 aaPredicted RBP19.5■□□□□ 0.71
NUP54-205ENST00000507257 MYMKA6NI61 221 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 CYTH3O43739 400 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 FTCDO95954 541 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 GYG1P46976 350 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 USP11P51784 963 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 PPP2R2AP63151 447 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 FKBP3Q00688 224 aaKnown RBP19.5■□□□□ 0.71
NUP54-205ENST00000507257 GRB10Q13322 594 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 CYB5D1Q6P9G0 228 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 LARP4BQ92615 738 aaKnown RBP19.5■□□□□ 0.71
NUP54-205ENST00000507257 CENPTQ96BT3 561 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 SPZ1Q9BXG8 430 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 IL17RBQ9NRM6 502 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 COL4A3BPQ9Y5P4 624 aa19.5■□□□□ 0.71
NUP54-205ENST00000507257 DNAJC8O75937 253 aaPredicted RBP19.49■□□□□ 0.71
NUP54-205ENST00000507257 NTSR2O95665 410 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 GNA11P29992 359 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 RPS6KA1Q15418 735 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 HEATR3Q7Z4Q2 680 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 SEC14L1Q92503 715 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 TATDN2Q93075 761 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 SEC16BQ96JE7 1060 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 KDM4CQ9H3R0 1056 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 PPANQ9NQ55 473 aaKnown RBP19.49■□□□□ 0.71
NUP54-205ENST00000507257 STRCP1A6NGW2 1772 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 CCNT1O60563 726 aaKnown RBP19.49■□□□□ 0.71
NUP54-205ENST00000507257 ANXA13P27216 316 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 SMARCA1P28370 1054 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 NF2P35240 595 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 NBPF9Q3BBW0 867 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 CACNA2D3Q8IZS8 1091 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 HPS3Q969F9 1004 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 CNOT10Q9H9A5 744 aaKnown RBP19.49■□□□□ 0.71
NUP54-205ENST00000507257 SWAP70Q9UH65 585 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 SUFUQ9UMX1 484 aa19.49■□□□□ 0.71
NUP54-205ENST00000507257 KIF4AO95239 1232 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 SLC8A1P32418 973 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 KIAA0753Q2KHM9 967 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 PNMA5Q96PV4 448 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 MTMR9Q96QG7 549 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 SLITRK6Q9H5Y7 841 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 C6orf50Q9HD87 102 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 MYH4Q9Y623 1939 aa19.48■□□□□ 0.71
NUP54-205ENST00000507257 ESYT2A0FGR8 921 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 ZBTB48P10074 688 aaPredicted RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 HPDP32754 393 aaPredicted RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 CTNNA1P35221 906 aaKnown RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 TECP42680 631 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 TFAP4Q01664 338 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 MECOMQ03112 1051 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 EVX2Q03828 476 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 HLTFQ14527 1009 aaKnown RBP eCLIP19.47■□□□□ 0.71
NUP54-205ENST00000507257 PDIA5Q14554 519 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 LETM2Q2VYF4 491 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 FBXO33Q7Z6M2 555 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 TBC1D5Q92609 795 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 RAD54LQ92698 747 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 FAM84BQ96KN1 310 aaPredicted RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 VEZTQ9HBM0 779 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 ODF2LQ9ULJ1 636 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 LEMD3Q9Y2U8 911 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 DNM1LO00429 736 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 BYSLQ13895 437 aaKnown RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 TRADDQ15628 312 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 TMC4Q7Z404 712 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 MYOCDQ8IZQ8 938 aa19.47■□□□□ 0.71
NUP54-205ENST00000507257 BSDC1Q9NW68 430 aaPredicted RBP19.47■□□□□ 0.71
NUP54-205ENST00000507257 COL4A1P02462 1669 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 A0A087X0T9 212 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 A0A0G2JS52 829 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 MGRN1O60291 552 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 FAM228BP0C875 321 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 CYP2D6P10635 497 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 SCTRP47872 440 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 EIF3BP55884 814 aaKnown RBP19.46■□□□□ 0.71
NUP54-205ENST00000507257 C12orf60Q5U649 245 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 GKAP1Q5VSY0 366 aaPredicted RBP19.46■□□□□ 0.71
NUP54-205ENST00000507257 TRIM59Q8IWR1 403 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 ZC3H3Q8IXZ2 948 aaKnown RBP19.46■□□□□ 0.71
NUP54-205ENST00000507257 RASGEF1CQ8N431 466 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 CCT6BQ92526 530 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 RAPGEF5Q92565 580 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 LSM14BQ9BX40 385 aaKnown RBP19.46■□□□□ 0.71
NUP54-205ENST00000507257 RAB34Q9BZG1 259 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 TANGO6Q9C0B7 1094 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 NLRC4Q9NPP4 1024 aa19.46■□□□□ 0.71
NUP54-205ENST00000507257 BZW2Q9Y6E2 419 aaKnown RBP19.46■□□□□ 0.71
NUP54-205ENST00000507257 PGRMC1O00264 195 aaKnown RBP19.45■□□□□ 0.7
NUP54-205ENST00000507257 EZRP15311 586 aaKnown RBP19.45■□□□□ 0.7
NUP54-205ENST00000507257 TMEM119Q4V9L6 283 aa19.45■□□□□ 0.7
NUP54-205ENST00000507257 FAM228AQ86W67 206 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms