RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 PRPF40AO75400 957 aaKnown RBP8.13□□□□□ -1.11
NUP54-204ENST00000506098 CAPN15O75808 1086 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 KCNA2P16389 499 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 CYP2B6P20813 491 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 CMA1P23946 247 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 TXKP42681 527 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 ME1P48163 572 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 FLT3LGP49771 235 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 UBE2HP62256 183 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 GRIN1Q05586 938 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 PPP2R5CQ13362 524 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 NFKBIBQ15653 356 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 TMEM266Q2M3C6 531 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 RESP18Q5W5W9 173 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 TAPT1Q6NXT6 567 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 CCDC62Q6P9F0 684 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 OTOP1Q7RTM1 612 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 ZFP91Q96JP5 570 aaPredicted RBP8.13□□□□□ -1.11
NUP54-204ENST00000506098 CLIC6Q96NY7 704 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 ZNF577Q9BSK1 485 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 TTC12Q9H892 705 aaPredicted RBP8.13□□□□□ -1.11
NUP54-204ENST00000506098 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.13□□□□□ -1.11
NUP54-204ENST00000506098 FLRT1Q9NZU1 646 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 NRBP1Q9UHY1 535 aa8.13□□□□□ -1.11
NUP54-204ENST00000506098 VWA3AA6NCI4 1184 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 ATP9AO75110 1047 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 GADD45BO75293 160 aaPredicted RBP8.12□□□□□ -1.11
NUP54-204ENST00000506098 TECP42680 631 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 SP2Q02086 613 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 PRKCZQ05513 592 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 ITGB3BPQ13352 177 aaPredicted RBP8.12□□□□□ -1.11
NUP54-204ENST00000506098 ACVR2BQ13705 512 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 CCL14Q16627 93 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 LRCH2Q5VUJ6 765 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 IQSEC1Q6DN90 963 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 SHC4Q6S5L8 630 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 GIMAP8Q8ND71 665 aaPredicted RBP8.12□□□□□ -1.11
NUP54-204ENST00000506098 PXYLP1Q8TE99 480 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 SCFD2Q8WU76 684 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 TEKT3Q9BXF9 490 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 RAB34Q9BZG1 259 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 CCSER1Q9C0I3 900 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 CSRNP2Q9H175 543 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 DDX41Q9UJV9 622 aaKnown RBP8.12□□□□□ -1.11
NUP54-204ENST00000506098 VAV3Q9UKW4 847 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 HPSEQ9Y251 543 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 STK24Q9Y6E0 443 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 DDX49Q9Y6V7 483 aaKnown RBP8.12□□□□□ -1.11
NUP54-204ENST00000506098 SIP14410 1827 aa8.12□□□□□ -1.11
NUP54-204ENST00000506098 CENPFP49454 3210 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 GOLGA6L4A6NEF3 574 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 NKRFO15226 690 aaKnown RBP eCLIP8.11□□□□□ -1.11
NUP54-204ENST00000506098 MARCH6O60337 910 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 GAS7O60861 476 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 ATG7O95352 703 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 ZNF865P0CJ78 1059 aaPredicted RBP8.11□□□□□ -1.11
NUP54-204ENST00000506098 MUTP22033 750 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 KRT76Q01546 638 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 NEDD9Q14511 834 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 TTLL4Q14679 1199 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 HYIQ5T013 277 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 ZNF746Q6NUN9 644 aaPredicted RBP8.11□□□□□ -1.11
NUP54-204ENST00000506098 SEPT14Q6ZU15 432 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 FBXO16Q8IX29 292 aaPredicted RBP8.11□□□□□ -1.11
NUP54-204ENST00000506098 KCTD17Q8N5Z5 321 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 ENGASEQ8NFI3 743 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 RDM1Q8NG50 284 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 TRIB2Q92519 343 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 GJA10Q969M2 543 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 MMTAG2Q9BU76 263 aaKnown RBP8.11□□□□□ -1.11
NUP54-204ENST00000506098 PDGFCQ9NRA1 345 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 LRWD1Q9UFC0 647 aa8.11□□□□□ -1.11
NUP54-204ENST00000506098 TRIP11Q15643 1979 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 POTEMA6NI47 508 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 EML1O00423 815 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 ECM2O94769 699 aaPredicted RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 FARP2O94887 1054 aaPredicted RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 ARIH2O95376 493 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 MBD3O95983 291 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 TXNP10599 105 aaKnown RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 CYBAP13498 195 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 UBA1P22314 1058 aaKnown RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 RPA1P27694 616 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 SFNP31947 248 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 JAK3P52333 1124 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 SNW1Q13573 536 aaKnown RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 EPHA7Q15375 998 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 LY6KQ17RY6 165 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 SKOR2Q2VWA4 1001 aaPredicted RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 CCDC144BQ3MJ40 725 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 DUSP28Q4G0W2 176 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 CELF3Q5SZQ8 465 aaKnown RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 MFSD14CQ5VZR4 134 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 USP49Q70CQ1 688 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 EEPD1Q7L9B9 569 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 SMAP1Q8IYB5 467 aaPredicted RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 FMR1NBQ8N0W7 255 aaPredicted RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 GPT2Q8TD30 523 aa8.1□□□□□ -1.11
NUP54-204ENST00000506098 IPO4Q8TEX9 1081 aaKnown RBP8.1□□□□□ -1.11
NUP54-204ENST00000506098 MRPS27Q92552 414 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 1912.4 ms