RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SYNRGQ9UMZ2 1314 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 NKRFO15226 690 aaKnown RBP eCLIP13.47□□□□□ -0.256e-7■■■□□ 16.5
CUX1-210ENST00000497815 MSCO60682 206 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 C6orf222P0C671 652 aaPredicted RBP13.47□□□□□ -0.25
CUX1-210ENST00000497815 ARHGAP1Q07960 439 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 NEDD9Q14511 834 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 CALCRLQ16602 461 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 CELF3Q5SZQ8 465 aaKnown RBP13.47□□□□□ -0.25
CUX1-210ENST00000497815 SDF4Q9BRK5 362 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 FTOQ9C0B1 505 aaKnown RBP eCLIP13.47□□□□□ -0.25
CUX1-210ENST00000497815 TMEM60Q9H2L4 133 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 TELO2Q9Y4R8 837 aa13.47□□□□□ -0.25
CUX1-210ENST00000497815 MYADML2A6NDP7 307 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 GAS7O60861 476 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 FARP2O94887 1054 aaPredicted RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 BAG4O95429 457 aaKnown RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 TFRCP02786 760 aaKnown RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 NUCB2P80303 420 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 BEX3Q00994 111 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 LAMC2Q13753 1193 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 LRCH2Q5VUJ6 765 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 GIMAP8Q8ND71 665 aaPredicted RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 ETNPPLQ8TBG4 499 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 U2AF1L4Q8WU68 220 aaKnown RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 AFG1LQ8WV93 481 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 SLC5A5Q92911 643 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 ABHD8Q96I13 439 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 SPATA33Q96N06 139 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 SENP7Q9BQF6 1050 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 SPC25Q9HBM1 224 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 JPH1Q9HDC5 661 aaPredicted RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 KCNMB3Q9NPA1 279 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.46□□□□□ -0.25
CUX1-210ENST00000497815 CLIC4Q9Y696 253 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 KIAA1217Q5T5P2 1943 aa13.46□□□□□ -0.25
CUX1-210ENST00000497815 POTEFA5A3E0 1075 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 NOP56O00567 594 aaKnown RBP13.45□□□□□ -0.26
CUX1-210ENST00000497815 DHX15O43143 795 aaKnown RBP13.45□□□□□ -0.26
CUX1-210ENST00000497815 CHMP2AO43633 222 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 ADAMTS4O75173 837 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 SGPL1O95470 568 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 GJB1P08034 283 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 TXKP42681 527 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 GJA9P57773 515 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 PTGDRQ13258 359 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 SF3A1Q15459 793 aaKnown RBP13.45□□□□□ -0.26
CUX1-210ENST00000497815 FSCN1Q16658 493 aaKnown RBP13.45□□□□□ -0.26
CUX1-210ENST00000497815 HSDL1Q3SXM5 330 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 METTL7BQ6UX53 244 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 HAS1Q92839 578 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 CHAMP1Q96JM3 812 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 TEKT3Q9BXF9 490 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 TBC1D22BQ9NU19 505 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 TFIP11Q9UBB9 837 aaKnown RBP13.45□□□□□ -0.26
CUX1-210ENST00000497815 SLC9A2Q9UBY0 812 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 TCEAL9Q9UHQ7 104 aa13.45□□□□□ -0.26
CUX1-210ENST00000497815 NFASCO94856 1347 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 TBX3O15119 743 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 CCNE2O96020 404 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 OR52Z1P0C646 297 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 NCLP19338 710 aaKnown RBP13.44□□□□□ -0.26
CUX1-210ENST00000497815 CPT1AP50416 773 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 ORC2Q13416 577 aaPredicted RBP13.44□□□□□ -0.26
CUX1-210ENST00000497815 LRRC41Q15345 812 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 GNASQ5JWF2 1037 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 RNF180Q86T96 592 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 SLFN12Q8IYM2 578 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 C4orf32Q8N8J7 132 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 ARRDC4Q8NCT1 418 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 FAM20AQ96MK3 541 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 ZNF396Q96N95 335 aaPredicted RBP13.44□□□□□ -0.26
CUX1-210ENST00000497815 MTMR9Q96QG7 549 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 USP28Q96RU2 1077 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 RIT2Q99578 217 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 UPF3AQ9H1J1 476 aaKnown RBP13.44□□□□□ -0.26
CUX1-210ENST00000497815 UNC45AQ9H3U1 944 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 CHMP5Q9NZZ3 219 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 Q9Y3F1 56 aa13.44□□□□□ -0.26
CUX1-210ENST00000497815 CCDC85CA6NKD9 419 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 CTAGE5O15320 804 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 PSMD10O75832 226 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 MMP3P08254 477 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 MYL3P08590 195 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 GJA8P48165 433 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 CHMP4BP1P59074 171 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 ACTR2P61160 394 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 DNM1Q05193 864 aaKnown RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 BRDTQ58F21 947 aaPredicted RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 UTP14CQ5TAP6 766 aaKnown RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 NCAPH2Q6IBW4 605 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 PPTC7Q8NI37 304 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 EMID1Q96A84 441 aaPredicted RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 GPR20Q99678 358 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 TTC12Q9H892 705 aaPredicted RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 OGDHLQ9ULD0 1010 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 CIZ1Q9ULV3 898 aaPredicted RBP13.43□□□□□ -0.26
CUX1-210ENST00000497815 PCDHA12Q9UN75 941 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 CEP131Q9UPN4 1083 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 SAMM50Q9Y512 469 aa13.43□□□□□ -0.26
CUX1-210ENST00000497815 ELP1O95163 1332 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms