RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMC5Q6UXY8 1006 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 ZNF227Q86WZ6 799 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 KREMEN2Q8NCW0 462 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 CLDND1Q9NY35 253 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 HSPBP1Q9NZL4 362 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 LRP2BPQ9P2M1 347 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 ADAM29Q9UKF5 820 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 HS3ST3A1Q9Y663 406 aa6.79□□□□□ -1.32
VPS50-219ENST00000495039 ITGAVP06756 1048 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 SV2CQ496J9 727 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 HS1BP3Q53T59 392 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 CRB2Q5IJ48 1285 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS50-219ENST00000495039 ANAPC16Q96DE5 110 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 SMOC1Q9H4F8 434 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 WASF3Q9UPY6 502 aa6.78□□□□□ -1.32
VPS50-219ENST00000495039 KCNJ6P48051 423 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 KLF10Q13118 480 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 PRSS53Q2L4Q9 553 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 CYP4F22Q6NT55 531 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 RALYLQ86SE5 291 aaKnown RBP6.77□□□□□ -1.33
VPS50-219ENST00000495039 NT5DC4Q86YG4 428 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 Q8TCH9 128 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 SEC61A2Q9H9S3 476 aa6.77□□□□□ -1.33
VPS50-219ENST00000495039 KRIT1O00522 736 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 COL6A1P12109 1028 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 LCP1P13796 627 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 VASNQ6EMK4 673 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 TRIM48Q8IWZ4 208 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 NUDT10Q8NFP7 164 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 TTLL11Q8NHH1 800 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 NUDT11Q96G61 164 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 DLL4Q9NR61 685 aa6.76□□□□□ -1.33
VPS50-219ENST00000495039 CNOT4O95628 575 aaKnown RBP6.75□□□□□ -1.33
VPS50-219ENST00000495039 CHGBP05060 677 aa6.75□□□□□ -1.33
VPS50-219ENST00000495039 GFRA1P56159 465 aa6.75□□□□□ -1.33
VPS50-219ENST00000495039 C6orf15Q6UXA7 325 aaPredicted RBP6.75□□□□□ -1.33
VPS50-219ENST00000495039 ZNF341Q9BYN7 854 aa6.75□□□□□ -1.33
VPS50-219ENST00000495039 ASH2LQ9UBL3 628 aa6.75□□□□□ -1.33
VPS50-219ENST00000495039 KLHL18O94889 574 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 SF1Q15637 639 aaKnown RBP6.74□□□□□ -1.33
VPS50-219ENST00000495039 SMAD2Q15796 467 aaKnown RBP6.74□□□□□ -1.33
VPS50-219ENST00000495039 TMCO4Q5TGY1 634 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 Q6ZUG5 572 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 IFNL2Q8IZJ0 200 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 DTX3Q8N9I9 347 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 TMEM145Q8NBT3 493 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 RBPJLQ9UBG7 517 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 ING1Q9UK53 422 aaPredicted RBP6.74□□□□□ -1.33
VPS50-219ENST00000495039 SLC4A7Q9Y6M7 1214 aa6.74□□□□□ -1.33
VPS50-219ENST00000495039 SUSD5O60279 629 aa6.73□□□□□ -1.33
VPS50-219ENST00000495039 PRKD1Q15139 912 aaPredicted RBP6.73□□□□□ -1.33
VPS50-219ENST00000495039 PROSER1Q86XN7 944 aa6.73□□□□□ -1.33
VPS50-219ENST00000495039 FAM178BQ8IXR5 827 aa6.73□□□□□ -1.33
VPS50-219ENST00000495039 NPFFR2Q9Y5X5 522 aa6.73□□□□□ -1.33
VPS50-219ENST00000495039 FBXO21O94952 628 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 HDLBPQ00341 1268 aaKnown RBP6.72□□□□□ -1.33
VPS50-219ENST00000495039 DENND5AQ6IQ26 1287 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 TCTN3Q6NUS6 607 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 C1orf159Q96HA4 380 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 GNRHR2Q96P88 292 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 LMF1Q96S06 567 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 SLC6A20Q9NP91 592 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 ACTR10Q9NZ32 417 aa6.72□□□□□ -1.33
VPS50-219ENST00000495039 SLC35F1Q5T1Q4 408 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 PHF19Q5T6S3 580 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 LARP1BQ659C4 914 aaKnown RBP6.71□□□□□ -1.34
VPS50-219ENST00000495039 REXO1L1PQ8IX06 675 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 GIMAP8Q8ND71 665 aaPredicted RBP6.71□□□□□ -1.34
VPS50-219ENST00000495039 AJUBAQ96IF1 538 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 CDIP1Q9H305 208 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 INPP5FQ9Y2H2 1132 aa6.71□□□□□ -1.34
VPS50-219ENST00000495039 SLC27A2O14975 620 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 SMAD7O15105 426 aaKnown RBP6.7□□□□□ -1.34
VPS50-219ENST00000495039 FOXS1O43638 330 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 KNG1P01042 644 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 CSF2RBP32927 897 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 TGFB2P61812 414 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 GRIN1Q05586 938 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 FOXE3Q13461 319 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 FHL2Q14192 279 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 TNNI3KQ59H18 835 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 RNF207Q6ZRF8 634 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 PIP4K2CQ8TBX8 421 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 LRRC37BQ96QE4 947 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 ADOQ96SZ5 270 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 ZFP69BQ9UJL9 534 aa6.7□□□□□ -1.34
VPS50-219ENST00000495039 ZFR2Q9UPR6 939 aaKnown RBP6.7□□□□□ -1.34
VPS50-219ENST00000495039 B2RBV5 119 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 NPIPB8E9PQR5 432 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 MAP4K2Q12851 820 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 SKIDA1Q1XH10 827 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 ZNF568Q3ZCX4 644 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 MIIPQ5JXC2 388 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 GPR155Q7Z3F1 870 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 TGIF2Q9GZN2 237 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 GPR27Q9NS67 375 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 NUB1Q9Y5A7 615 aa6.69□□□□□ -1.34
VPS50-219ENST00000495039 DDAH1O94760 285 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 CKMP06732 381 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms