RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	FGR	P09769	529 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	CST5	P28325	142 aa	Predicted RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	GJA9	P57773	515 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	NUCB1	Q02818	461 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	FPGS	Q05932	587 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	FAAP100	Q0VG06	881 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	MUM1L1	Q5H9M0	696 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	C9orf50	Q5SZB4	431 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	IQSEC1	Q6DN90	963 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	FAM109B	Q6ICB4	259 aa	Predicted RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	TTBK2	Q6IQ55	1244 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	CWC27	Q6UX04	472 aa	Known RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	KIAA1211	Q6ZU35	1233 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	SV2A	Q7L0J3	742 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	EEPD1	Q7L9B9	569 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	ANKRD33	Q7Z3H0	272 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	ZNF589	Q86UQ0	364 aa	Predicted RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	IQCA1	Q86XH1	822 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	GPR161	Q8N6U8	529 aa	Known RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	EXOC6	Q8TAG9	804 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	NANOS1	Q8WY41	292 aa	Known RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	POM121	Q96HA1	1249 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	RNPC3	Q96LT9	517 aa	Known RBP	8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	STXBP5L	Q9Y2K9	1186 aa		8.84	□□□□□ -0.99
RBM39-238	ENST00000493853	ZMYM6	O95789	1325 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	FRMPD2	Q68DX3	1309 aa	Predicted RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	RANBP2	P49792	3224 aa	Known RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	ZNF236	Q9UL36	1845 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	MYADML2	A6NDP7	307 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	FAM181B	A6NEQ2	426 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853		B4DLN1	442 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	ARVCF	O00192	962 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	CABYR	O75952	493 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	IGHD	P01880	384 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	MRPL12	P52815	198 aa	Known RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	BEX3	Q00994	111 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	POU4F2	Q12837	409 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	BAAT	Q14032	418 aa	Predicted RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	BTNL9	Q6UXG8	535 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	PLEKHM2	Q8IWE5	1019 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	UPF3A	Q9H1J1	476 aa	Known RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	RANBP17	Q9H2T7	1088 aa	Known RBP	8.83	□□□□□ -1
RBM39-238	ENST00000493853	KAT14	Q9H8E8	782 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	CYP39A1	Q9NYL5	469 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	CTNNA3	Q9UI47	895 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853		A0A0G2JMZ2	1700 aa		8.83	□□□□□ -1
RBM39-238	ENST00000493853	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	DLL1	O00548	723 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	DHX16	O60231	1041 aa	Known RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	TIMP1	P01033	207 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	PDHB	P11177	359 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	ITGB8	P26012	769 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	CALML3	P27482	149 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	NOV	P48745	357 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	NT5C2	P49902	561 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	SMAD3	P84022	425 aa	Known RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	PPIG	Q13427	754 aa	Known RBP eCLIP	8.82	□□□□□ -1	6e-21	■□□□□ 10
RBM39-238	ENST00000493853	FSCN1	Q16658	493 aa	Known RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	IMMT	Q16891	758 aa	Known RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	BRDT	Q58F21	947 aa	Predicted RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	GPATCH4	Q5T3I0	446 aa	Known RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	CCSAP	Q6IQ19	270 aa	Predicted RBP	8.82	□□□□□ -1
RBM39-238	ENST00000493853	MFSD5	Q6N075	450 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	RNF207	Q6ZRF8	634 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	RASGRP2	Q7LDG7	609 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	TLK2	Q86UE8	772 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	DGKH	Q86XP1	1220 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	TMEM199	Q8N511	208 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	FGD4	Q96M96	766 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	ZKSCAN3	Q9BRR0	538 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	ESYT1	Q9BSJ8	1104 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	GRIP2	Q9C0E4	1043 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	VTA1	Q9NP79	307 aa		8.82	□□□□□ -1
RBM39-238	ENST00000493853	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	8.81	□□□□□ -1
RBM39-238	ENST00000493853	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	8.81	□□□□□ -1
RBM39-238	ENST00000493853	NFIB	O00712	420 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	ADCY6	O43306	1168 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	IL2RA	P01589	272 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	CDK7	P50613	346 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	ZNF543	Q08ER8	600 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	ITGA7	Q13683	1181 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	MAP7D1	Q3KQU3	841 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	USH1G	Q495M9	461 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	CXCL17	Q6UXB2	119 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	TBC1D10C	Q8IV04	446 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	FBXO16	Q8IX29	292 aa	Predicted RBP	8.81	□□□□□ -1
RBM39-238	ENST00000493853	CNTNAP3B	Q96NU0	1288 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	COL25A1	Q9BXS0	654 aa	Predicted RBP	8.81	□□□□□ -1
RBM39-238	ENST00000493853	SEZ6L	Q9BYH1	1024 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	CNTNAP3	Q9BZ76	1288 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	WDR11	Q9BZH6	1224 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	PPP1R12C	Q9BZL4	782 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	KRT23	Q9C075	422 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	KATNBL1	Q9H079	304 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	SEMA6B	Q9H3T3	888 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	PDGFC	Q9NRA1	345 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853		Q9Y3F1	56 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	RLF	Q13129	1914 aa		8.81	□□□□□ -1
RBM39-238	ENST00000493853	LOC102724159	A0A0B4J2E5	919 aa		8.8	□□□□□ -1
RBM39-238	ENST00000493853		B4E1Z4	1266 aa		8.8	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms