RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TBC1D10CQ8IV04 446 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 STK11IPQ8N1F8 1099 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 CRACR2BQ8N4Y2 399 aaPredicted RBP6.59□□□□□ -1.35
VPS41-214ENST00000490924 MSANTD4Q8NCY6 345 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 JARID2Q92833 1246 aaPredicted RBP6.59□□□□□ -1.35
VPS41-214ENST00000490924 MYO19Q96H55 970 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 PUS3Q9BZE2 481 aaKnown RBP6.59□□□□□ -1.35
VPS41-214ENST00000490924 NAPBQ9H115 298 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 MAGEF1Q9HAY2 307 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 BRMS1Q9HCU9 246 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 INTS13Q9NVM9 706 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 RMND1Q9NWS8 449 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 TRMT1Q9NXH9 659 aaKnown RBP6.59□□□□□ -1.35
VPS41-214ENST00000490924 RAI14Q9P0K7 980 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 NFE2L3Q9Y4A8 694 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 DOCK2Q92608 1830 aa6.59□□□□□ -1.35
VPS41-214ENST00000490924 SHANK3Q9BYB0 1731 aa6.59□□□□□ -1.36
VPS41-214ENST00000490924 RREB1Q92766 1687 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ZNF804BA4D1E1 1349 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ZNF532Q9HCE3 1301 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 A0A1W2PQC6 194 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 TRIM75PA6NK02 468 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 PRPF3O43395 683 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 KIF5CO60282 957 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 RANBP6O60518 1105 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 RPS6KA5O75582 802 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 EIF3JO75822 258 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 A1BGP04217 495 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 CHGBP05060 677 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ATP1A3P13637 1013 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 RFX1P22670 979 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 CDC27P30260 824 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ADORA1P30542 326 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 GUCY1B3Q02153 619 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 HYAL2Q12891 473 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ORC2Q13416 577 aaPredicted RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 CUL4BQ13620 913 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 TTC39BQ5VTQ0 682 aaPredicted RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 GALNT17Q6IS24 598 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 CC2D1AQ6P1N0 951 aaPredicted RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 MFSD6Q6ZSS7 791 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 CYB5R4Q7L1T6 521 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 APTXQ7Z2E3 356 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 SRGAP1Q7Z6B7 1085 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 FOXP4Q8IVH2 680 aaPredicted RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 DIS3L2Q8IYB7 885 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 ZNF34Q8IZ26 560 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 IFNL3Q8IZI9 196 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 SPATA5Q8NB90 893 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ANKRD20A12PQ8NF67 263 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 PIK3R5Q8WYR1 880 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 ESR2Q92731 530 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 UTP4Q969X6 686 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 CDC5LQ99459 802 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 UTP14AQ9BVJ6 771 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 BRIP1Q9BX63 1249 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 VIPAS39Q9H9C1 493 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 PRDM11Q9NQV5 511 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 FANCLQ9NW38 375 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 TMOD3Q9NYL9 352 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 CWC15Q9P013 229 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 ADD3Q9UEY8 706 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 LIMA1Q9UHB6 759 aaKnown RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 CDC23Q9UJX2 597 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 MAN1B1Q9UKM7 699 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 NAP1L2Q9ULW6 460 aaPredicted RBP6.58□□□□□ -1.36
VPS41-214ENST00000490924 ANKRD36CQ5JPF3 1778 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 BCL9O00512 1426 aa6.58□□□□□ -1.36
VPS41-214ENST00000490924 GSG1L2A8MUP6 293 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 TULP2O00295 520 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 IFIT3O14879 490 aaKnown RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 DKK1O94907 266 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 TBC1D8O95759 1140 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 CDK11BP21127 795 aaKnown RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 BMP6P22004 513 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 BRD2P25440 801 aaKnown RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 MARCKSP29966 332 aaPredicted RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 SCNN1AP37088 669 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 TOB1P50616 345 aaPredicted RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 HAND2P61296 217 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 ITIH3Q06033 890 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 PPP2R3AQ06190 1150 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 PNOCQ13519 176 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 WTAPQ15007 396 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 CRTC2Q53ET0 693 aaPredicted RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 COBLL1Q53SF7 1204 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 CCDC178Q5BJE1 867 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 WDR93Q6P2C0 686 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 NFXL1Q6ZNB6 911 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 ACAD11Q709F0 780 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 CHST3Q7LGC8 479 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 MICU3Q86XE3 530 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 FANCBQ8NB91 859 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 RETREG2Q8NC44 543 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 NOC3LQ8WTT2 800 aaKnown RBP6.57□□□□□ -1.36
VPS41-214ENST00000490924 PHF20Q9BVI0 1012 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 PPP1R12CQ9BZL4 782 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 ACBD3Q9H3P7 528 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 CUEDC2Q9H467 287 aa6.57□□□□□ -1.36
VPS41-214ENST00000490924 MED4Q9NPJ6 270 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms