RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 KCNT2Q6UVM3 1135 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 LBX2Q6XYB7 198 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 OTOP3Q7RTS5 596 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 ZCCHC14Q8WYQ9 949 aaKnown RBP5.03□□□□□ -1.6
CPSF3-205ENST00000489629 LCORQ96JN0 433 aaPredicted RBP5.03□□□□□ -1.6
CPSF3-205ENST00000489629 CLIC6Q96NY7 704 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 TMEM209Q96SK2 561 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 ZFYVE21Q9BQ24 234 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 RBPJLQ9UBG7 517 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 MSRB2Q9Y3D2 182 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 SLC27A2O14975 620 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 B4GALT3O60512 393 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 MAFKO60675 156 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 COL6A1P12109 1028 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 RBM25P49756 843 aaKnown RBP5.02□□□□□ -1.61
CPSF3-205ENST00000489629 ZNF827Q17R98 1081 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 YOD1Q5VVQ6 348 aaPredicted RBP5.02□□□□□ -1.61
CPSF3-205ENST00000489629 PRAMEF18Q5VWM3 479 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 STYK1Q6J9G0 422 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 PKN3Q6P5Z2 889 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 BORAQ6PGQ7 559 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 TRIM48Q8IWZ4 208 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 UHMK1Q8TAS1 419 aaKnown RBP5.02□□□□□ -1.61
CPSF3-205ENST00000489629 ZNF669Q96BR6 464 aaPredicted RBP5.02□□□□□ -1.61
CPSF3-205ENST00000489629 SAMD11Q96NU1 681 aa5.02□□□□□ -1.61
CPSF3-205ENST00000489629 ASXL2Q76L83 1435 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 TRAV20A0A0B4J274 112 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 BLACEA4D250 179 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 GRK2P25098 689 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 GRK3P35626 688 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 GPR85P60893 370 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 GRIN1Q05586 938 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 KIZQ2M2Z5 673 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 ZXDCQ2QGD7 858 aaPredicted RBP5.01□□□□□ -1.61
CPSF3-205ENST00000489629 TMC5Q6UXY8 1006 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 NSMFQ6X4W1 530 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 FAM124AQ86V42 546 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 RBM12BQ8IXT5 1001 aaKnown RBP5.01□□□□□ -1.61
CPSF3-205ENST00000489629 LRRC47Q8N1G4 583 aaKnown RBP5.01□□□□□ -1.61
CPSF3-205ENST00000489629 TTC9BQ8N6N2 239 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 DTX3Q8N9I9 347 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 BORCS6Q96GS4 357 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 WRNIP1Q96S55 665 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 SMPD4Q9NXE4 827 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 CROTQ9UKG9 612 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 MYRFQ9Y2G1 1151 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 TELO2Q9Y4R8 837 aa5.01□□□□□ -1.61
CPSF3-205ENST00000489629 NKRFO15226 690 aaKnown RBP eCLIP5□□□□□ -1.61
CPSF3-205ENST00000489629 CYP7B1O75881 506 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 LTFP02788 710 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 COL6A2P12110 1019 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 INSRRP14616 1297 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 FAHP16930 419 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 TUSC3Q13454 348 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 IFNL3Q8IZI9 196 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 PUM2Q8TB72 1066 aaKnown RBP eCLIP5□□□□□ -1.61
CPSF3-205ENST00000489629 GPR20Q99678 358 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 C1QTNF3Q9BXJ4 246 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 TMEM168Q9H0V1 697 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 L2HGDHQ9H9P8 463 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 DLL4Q9NR61 685 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 PPP4R1LQ9P1A2 415 aa5□□□□□ -1.61
CPSF3-205ENST00000489629 ADCY3O60266 1144 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 SOD2P04179 222 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 CYP1A1P04798 512 aaPredicted RBP4.99□□□□□ -1.61
CPSF3-205ENST00000489629 EPHA5P54756 1037 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 IFRD2Q12894 506 aaPredicted RBP4.99□□□□□ -1.61
CPSF3-205ENST00000489629 SURF1Q15526 300 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 PAN2Q504Q3 1202 aaKnown RBP4.99□□□□□ -1.61
CPSF3-205ENST00000489629 SPATC1Q76KD6 591 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 LIMS2Q7Z4I7 341 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 LOXL4Q96JB6 756 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 SPATA9Q9BWV2 254 aa4.99□□□□□ -1.61
CPSF3-205ENST00000489629 C1QTNF3-AMACRE9PGA6 284 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 LAMTOR5O43504 91 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 KLHL18O94889 574 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 GNAT1P11488 350 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 EPHB4P54760 987 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 SPIRE1Q08AE8 756 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 CPZQ66K79 652 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 VASNQ6EMK4 673 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 TRMT10BQ6PF06 316 aaKnown RBP4.98□□□□□ -1.61
CPSF3-205ENST00000489629 PLEKHH3Q7Z736 793 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 KLHL36Q8N4N3 616 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 SH3RF2Q8TEC5 729 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 C8orf49Q96NF6 230 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 KCNJ15Q99712 375 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 IPPKQ9H8X2 491 aa4.98□□□□□ -1.61
CPSF3-205ENST00000489629 ZNF536O15090 1300 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 TCRBV5S4A2TA0A5A2 114 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 FAM47E-STBD1D6RA91 191 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 ACOT7O00154 380 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 PDPK1O15530 556 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 STK10O94804 968 aaKnown RBP4.97□□□□□ -1.61
CPSF3-205ENST00000489629 KNG1P01042 644 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 CHGBP05060 677 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 CKMP06732 381 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 ZNF20P17024 532 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 ZC3H6P61129 1189 aaKnown RBP4.97□□□□□ -1.61
CPSF3-205ENST00000489629 PPP2CBP62714 309 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms