RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 SPATA33Q96N06 139 aa10.86□□□□□ -0.67
COL17A1-207ENST00000488320 PHF7Q9BWX1 381 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 PRR23AA6NEV1 266 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 PROB1E7EW31 1015 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 TREHO43280 583 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 GALR2O43603 387 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-207ENST00000488320 MMP1P03956 469 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 MS4A1P11836 297 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 MYCLP12524 364 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-207ENST00000488320 NUBP1P53384 320 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 COASYQ13057 564 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 CBX2Q14781 532 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-207ENST00000488320 MCF2L2Q86YR7 1114 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 EFHBQ8N7U6 833 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 SYTL5Q8TDW5 730 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-207ENST00000488320 ASIC4Q96FT7 647 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 PLVAPQ9BX97 442 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 CLEC1BQ9P126 229 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 PLAGL2Q9UPG8 496 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 USP15Q9Y4E8 981 aaPredicted RBP10.85□□□□□ -0.67
COL17A1-207ENST00000488320 PLXNA3P51805 1871 aa10.85□□□□□ -0.67
COL17A1-207ENST00000488320 ADGRA3Q8IWK6 1321 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 SPTBN4Q9H254 2564 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 H3BRB1 525 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 SMIM10L2AP0DMW4 78 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 SMIM10L2BP0DMW5 78 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 PDHBP11177 359 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 GNAT1P11488 350 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 NRIP1P48552 1158 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 HSDL1Q3SXM5 330 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 MYSM1Q5VVJ2 828 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 TSHZ3Q63HK5 1081 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 ADGRD2Q7Z7M1 963 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 SMRP1Q8NCR6 262 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 MICAL1Q8TDZ2 1067 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 CLP1Q92989 425 aaKnown RBP10.84□□□□□ -0.67
COL17A1-207ENST00000488320 RIPOR3Q96MK2 946 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 OSBPL7Q9BZF2 842 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 UBA5Q9GZZ9 404 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 RNPEPQ9H4A4 650 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 TUT1Q9H6E5 874 aaKnown RBP10.84□□□□□ -0.67
COL17A1-207ENST00000488320 MLXIPQ9HAP2 919 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 BARX2Q9UMQ3 279 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-207ENST00000488320 ABCB11O95342 1321 aa10.84□□□□□ -0.67
COL17A1-207ENST00000488320 CAND2O75155 1236 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 GGPS1O95749 300 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 PDGFBP01127 241 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-207ENST00000488320 NR3C2P08235 984 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 ICAM3P32942 547 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 NOVP48745 357 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 ZNF543Q08ER8 600 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 PTPN21Q16825 1174 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 CELF3Q5SZQ8 465 aaKnown RBP10.83□□□□□ -0.68
COL17A1-207ENST00000488320 KCNV1Q6PIU1 500 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 POTEHQ6S545 545 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 ADSSL1Q8N142 457 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 POF1BQ8WVV4 589 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 NKD2Q969F2 451 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-207ENST00000488320 MAF1Q9H063 256 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 TLE6Q9H808 572 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 COL20A1Q9P218 1284 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 DDX19BQ9UMR2 479 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 MRPL11Q9Y3B7 192 aaKnown RBP10.83□□□□□ -0.68
COL17A1-207ENST00000488320 CACNA1AO00555 2505 aa10.83□□□□□ -0.68
COL17A1-207ENST00000488320 COL4A6Q14031 1691 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 ENPP3O14638 875 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 ORC4O43929 436 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 PPFIA3O75145 1194 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 CFBP00751 764 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 GOLGA8HP0CJ92 632 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 HSPD1P10809 573 aaKnown RBP10.82□□□□□ -0.68
COL17A1-207ENST00000488320 KCNA4P22459 653 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 DNAJB1P25685 340 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 NBL1P41271 181 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 CAMK1Q14012 370 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 NAALADL2Q58DX5 795 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 SPPL3Q8TCT6 385 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 P2RX5Q93086 422 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 C16orf70Q9BSU1 422 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 CPVLQ9H3G5 476 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 CHMP4BQ9H444 224 aaKnown RBP10.82□□□□□ -0.68
COL17A1-207ENST00000488320 PXMP2Q9NR77 195 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 ZBTB40Q9NUA8 1239 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 SETD4Q9NVD3 440 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 KAT6AQ92794 2004 aa10.82□□□□□ -0.68
COL17A1-207ENST00000488320 NOP56O00567 594 aaKnown RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 PER2O15055 1255 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 DHX16O60231 1041 aaKnown RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 ITGB1P05556 798 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 LINC00271P0C7V0 271 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 GHRP10912 638 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 HOXD8P13378 290 aaPredicted RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 ATF7P17544 494 aaPredicted RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 ARHGAP4P98171 946 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 CDC37Q16543 378 aaPredicted RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 ZMYM1Q5SVZ6 1142 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 GPATCH4Q5T3I0 446 aaKnown RBP10.81□□□□□ -0.68
COL17A1-207ENST00000488320 FRMD5Q7Z6J6 570 aa10.81□□□□□ -0.68
COL17A1-207ENST00000488320 KLHL23Q8NBE8 558 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms