RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 GPKOWQ92917 476 aaPredicted RBP eCLIP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MOV10L1Q9BXT6 1211 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 TYW1Q9NV66 732 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DDX20Q9UHI6 824 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PACSIN2Q9UNF0 486 aaPredicted RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PDE8AO60658 829 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 GHRP10912 638 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PDE6BP35913 854 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 NEK8Q86SG6 692 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 IGDCC4Q8TDY8 1250 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SUDS3Q9H7L9 328 aaPredicted RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MCM8Q9UJA3 840 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SRRM3A6NNA2 597 aaPredicted RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 RAD51CO43502 376 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 OPHN1O60890 802 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SKAP2O75563 359 aaPredicted RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 ATP6V1G2O95670 118 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FGGP02679 453 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PMS2P54278 862 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DBN1Q16643 649 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MAIP1Q8WWC4 291 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 RAPGEF5Q92565 580 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 LARP4BQ92615 738 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 AZI2Q9H6S1 392 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 ROBO2Q9HCK4 1378 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 A0A1W2PQJ5 194 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SNUPNO95149 360 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PDE8BO95263 885 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CHN1P15882 459 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 RANBP1P43487 201 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 ALX1Q15699 326 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SAMD1Q6SPF0 538 aaPredicted RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DDX23Q9BUQ8 820 aaKnown RBP16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 A2ML1A8K2U0 1454 aa16.63■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MAPK13O15264 365 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 HSD17B3P37058 310 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MRPS35P82673 323 aaKnown RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 REXO1Q8N1G1 1221 aaKnown RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 H0Y3Z8 333 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PCCAP05165 728 aaPredicted RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 BMP6P22004 513 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FAM47AQ5JRC9 791 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 RASGRP4Q8TDF6 673 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 HDAC7Q8WUI4 952 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 NT5C3AQ9H0P0 336 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 EHD2Q9NZN4 543 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CAPN6Q9Y6Q1 641 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CPS1P31327 1500 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 USP17L12C9JPN9 530 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 USP17L21D6R901 530 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FAM13AO94988 1023 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 TTMPQ5BVD1 217 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DDX27Q96GQ7 796 aaKnown RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 NAP1L4Q99733 375 aaKnown RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 STK17AQ9UEE5 414 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FRMD4BQ9Y2L6 1034 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SOS2Q07890 1332 aaPredicted RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 NEXMIFQ5QGS0 1516 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MMP14P50281 582 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 GDAP1Q8TB36 358 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PITPNM3Q9BZ71 974 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PIH1D3Q9NQM4 214 aaKnown RBP16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SNX24Q9Y343 169 aa16.62■□□□□ 0.25
HLA-DQB1-209ENST00000487676 OVOS2A0A0G2JMS6 1433 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 KLC1Q07866 573 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CUL3Q13618 768 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FAM83BQ5T0W9 1011 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PDXDC1Q6P996 788 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 TSEN2Q8NCE0 465 aaKnown RBP16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CASKIN2Q8WXE0 1202 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 KAZALD1Q96I82 304 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CALR3Q96L12 384 aaKnown RBP16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PANK4Q9NVE7 773 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PNMA2Q9UL42 364 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 ZNF652Q9Y2D9 606 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 USP15Q9Y4E8 981 aaPredicted RBP16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SMCO2A6NFE2 343 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MYBL2P10244 700 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PHKG2P15735 406 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 FERP16591 822 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PLCB3Q01970 1234 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MRRFQ96E11 262 aaKnown RBP16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 AMACRQ9UHK6 382 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PLAGL2Q9UPG8 496 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PRKAB2O43741 272 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 LMNB1P20700 586 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MCAMP43121 646 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 CHRNA2Q15822 529 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SCYL3Q8IZE3 742 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 ARL2BPQ9Y2Y0 163 aa16.61■□□□□ 0.25
HLA-DQB1-209ENST00000487676 TXNDC9O14530 226 aa16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MAP3K7O43318 606 aa16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 SH3GL2Q99962 352 aa16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 METTL14Q9HCE5 456 aaKnown RBP16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DIS3Q9Y2L1 958 aaKnown RBP16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 NOC2LQ9Y3T9 749 aaKnown RBP16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 DCTN3O75935 186 aa16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 PLEKHA8P1O95397 391 aa16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 MDM2Q00987 491 aaPredicted RBP16.6■□□□□ 0.25
HLA-DQB1-209ENST00000487676 LRRC41Q15345 812 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms