RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 TBC1D5Q92609 795 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 NLRP3Q96P20 1036 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 CEP89Q96ST8 783 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 EYA3Q99504 573 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 SNED1Q8TER0 1413 aa13.44□□□□□ -0.26
COL3A1-206ENST00000487010 MEFVO15553 781 aaPredicted RBP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 ZPR1O75312 459 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 KIAA0754O94854 1291 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 TDP2O95551 362 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 MYBP10242 640 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 GUCY1A3Q02108 690 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 COASYQ13057 564 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 MAPKAPK5Q8IW41 473 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 CNPY4Q8N129 248 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 OTUD6BQ8N6M0 293 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 DNAJC19Q96DA6 116 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 ATP6V1G3Q96LB4 118 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 CEP63Q96MT8 703 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 ATAD5Q96QE3 1844 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 A0A087X0T9 212 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 HMGB1P1B2RPK0 211 aaPredicted RBP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 RAD51CO43502 376 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 PPP1R37O75864 691 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 FAM228BP0C875 321 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 HSPA9P38646 679 aaKnown RBP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 FNTAP49354 379 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 TNNC1P63316 161 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 SEPT2Q15019 361 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 TRADDQ15628 312 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 PTGISQ16647 500 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 KIAA0753Q2KHM9 967 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 NAA35Q5VZE5 725 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 KCNV1Q6PIU1 500 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 C16orf86Q6ZW13 317 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 PRPF38AQ8NAV1 312 aaKnown RBP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 USP38Q8NB14 1042 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 UBA5Q9GZZ9 404 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 RIOX1Q9H6W3 641 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 AIPL1Q9NZN9 384 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 TMEM59LQ9UK28 342 aa13.43□□□□□ -0.26
COL3A1-206ENST00000487010 PACSIN2Q9UNF0 486 aaPredicted RBP13.43□□□□□ -0.26
COL3A1-206ENST00000487010 SPATA31A1Q5TZJ5 1347 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 hCG_1984214I3L0E3 225 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 CES2O00748 559 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 FSBPO95073 299 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 GNA14O95837 355 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 MDH1P40925 334 aaKnown RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 RNASE9P60153 205 aaKnown RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 GRIK5Q16478 980 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 ECM1Q16610 540 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 MICALCLQ6ZW33 695 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 TRIM59Q8IWR1 403 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 ZNF713Q8N859 430 aaPredicted RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 EIF1ADQ8N9N8 165 aaKnown RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 LINC00116Q8NCU8 138 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 ZNF473Q8WTR7 871 aaKnown RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 NYXQ9GZU5 481 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 POLD4Q9HCU8 107 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 PANK4Q9NVE7 773 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 PLAAQ9Y263 795 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 CAPN7Q9Y6W3 813 aa13.42□□□□□ -0.26
COL3A1-206ENST00000487010 DDX60LQ5H9U9 1706 aaKnown RBP13.42□□□□□ -0.26
COL3A1-206ENST00000487010 USP17L5A8MUK1 530 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 LDHCP07864 332 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 USP8P40818 1118 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ADCY7P51828 1080 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 MARSP56192 900 aaKnown RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 IRX3P78415 501 aaPredicted RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 PDE4CQ08493 712 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 KLHL30Q0D2K2 578 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ITGB3BPQ13352 177 aaPredicted RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 RAPGEF1Q13905 1077 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 FAM26FQ5R3K3 315 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 YTHDF3Q7Z739 585 aaKnown RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 CEP95Q96GE4 821 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 PACSIN1Q9BY11 444 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 TAF1DQ9H5J8 278 aaPredicted RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 TMBIM4Q9HC24 238 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 PLCB1Q9NQ66 1216 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ADAMTS1Q9UHI8 967 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 CDK5RAP2Q96SN8 1893 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 SRRM3A6NNA2 597 aaPredicted RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 BTNL10A8MVZ5 291 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ARID5AQ03989 594 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ASIC2Q16515 512 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 LRIG3Q6UXM1 1119 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 NLRP14Q86W24 1093 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 KLHL7Q8IXQ5 586 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 TAF4BQ92750 862 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 COA7Q96BR5 231 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 CCT8L2Q96SF2 557 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 ISCUQ9H1K1 167 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 THRAP3Q9Y2W1 955 aaKnown RBP13.41□□□□□ -0.26
COL3A1-206ENST00000487010 SBF2Q86WG5 1849 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 MYH4Q9Y623 1939 aa13.41□□□□□ -0.26
COL3A1-206ENST00000487010 RGL2O15211 777 aa13.4□□□□□ -0.26
COL3A1-206ENST00000487010 KCNQ2O43526 872 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms