RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 RAB30Q15771 203 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 MFSD5Q6N075 450 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 PLEKHM2Q8IWE5 1019 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 TMEM199Q8N511 208 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 MAGEB6Q8N7X4 407 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.04□□□□□ -1.12
HDAC3-209ENST00000486618 UHRF1Q96T88 793 aaPredicted RBP8.04□□□□□ -1.12
HDAC3-209ENST00000486618 MMP19Q99542 508 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 SENP7Q9BQF6 1050 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.04□□□□□ -1.12
HDAC3-209ENST00000486618 C1QTNF1Q9BXJ1 281 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 PRDM12Q9H4Q4 367 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 MSRAQ9UJ68 235 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 CNPY2Q9Y2B0 182 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 FRMD4BQ9Y2L6 1034 aa8.04□□□□□ -1.12
HDAC3-209ENST00000486618 BDP1A6H8Y1 2624 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ROBO3Q96MS0 1386 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 A0A1W2PRG0 241 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 BACH1O14867 736 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ATP9BO43861 1147 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ZNF500O60304 480 aaPredicted RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 PLCD1P51178 756 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ACLYP53396 1101 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 EGFLAMQ63HQ2 1017 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 PSRC1Q6PGN9 363 aaPredicted RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 TMEM179Q6ZVK1 233 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 TRMT2AQ8IZ69 625 aaKnown RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 MSL3Q8N5Y2 521 aaKnown RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 C1orf216Q8TAB5 229 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ATG4CQ96DT6 458 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ABHD17AQ96GS6 310 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 SCYL1Q96KG9 808 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 GLT1D1Q96MS3 346 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 PBX4Q9BYU1 374 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 CRNKL1Q9BZJ0 848 aaKnown RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 MTIF3Q9H2K0 278 aaKnown RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 NDFIP2Q9NV92 336 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 SWAP70Q9UH65 585 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 RAPGEFL1Q9UHV5 662 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 FAM184BQ9ULE4 1060 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 KIAA1024Q9UPX6 916 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 GNEQ9Y223 722 aaKnown RBP8.03□□□□□ -1.12
HDAC3-209ENST00000486618 ELP1O95163 1332 aa8.03□□□□□ -1.12
HDAC3-209ENST00000486618 TCF20Q9UGU0 1960 aaKnown RBP8.02□□□□□ -1.12
HDAC3-209ENST00000486618 MYH8P13535 1937 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 WDR46O15213 610 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 TLR3O15455 904 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 BNIP3LO60238 219 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ADAMTS4O75173 837 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 SURF6O75683 361 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ZNF865P0CJ78 1059 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 IGFBP4P22692 258 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 VAMP1P23763 118 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 STAT3P40763 770 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 MAP2K3P46734 347 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 RARSP54136 660 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 EPHA4P54764 986 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 GYS2P54840 703 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 MARSP56192 900 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 CLDN10P78369 228 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 GABPAQ06546 454 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 CCDC85BQ15834 202 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 AAK1Q2M2I8 961 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ZNF792Q3KQV3 632 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 TMEM240Q5SV17 173 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ZKSCAN2Q63HK3 967 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 TRIM50Q86XT4 487 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 RIOX2Q8IUF8 465 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 PCSK9Q8NBP7 692 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 GLMNQ92990 594 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 MKL1Q969V6 931 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 SLC28A3Q9HAS3 691 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 SPC25Q9HBM1 224 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ENAMQ9NRM1 1142 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 DNAAF2Q9NVR5 837 aaKnown RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 MCM9Q9NXL9 1143 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 FBXO9Q9UK97 447 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 TBX21Q9UL17 535 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 ATXN7L1Q9ULK2 861 aaPredicted RBP8.02□□□□□ -1.13
HDAC3-209ENST00000486618 TMX2Q9Y320 296 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 A0A0G2JMZ2 1700 aa8.02□□□□□ -1.13
HDAC3-209ENST00000486618 SPTBN5Q9NRC6 3674 aaKnown RBP8.01□□□□□ -1.13
HDAC3-209ENST00000486618 GRXCR1A8MXD5 290 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 DUSP11O75319 330 aaKnown RBP8.01□□□□□ -1.13
HDAC3-209ENST00000486618 STK10O94804 968 aaKnown RBP8.01□□□□□ -1.13
HDAC3-209ENST00000486618 PGK2P07205 417 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 TAL1P17542 331 aaPredicted RBP8.01□□□□□ -1.13
HDAC3-209ENST00000486618 ATP8B2P98198 1209 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 BIRC2Q13490 618 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 TMEM132BQ14DG7 1078 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 TTF1Q15361 905 aaPredicted RBP8.01□□□□□ -1.13
HDAC3-209ENST00000486618 KCNA10Q16322 511 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 RASIP1Q5U651 963 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 ZNF365Q70YC5 407 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 C16orf59Q7L2K0 433 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 ARMCX6Q7L4S7 300 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 SPICE1Q8N0Z3 855 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 OTUD6BQ8N6M0 293 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 KLHDC9Q8NEP7 349 aa8.01□□□□□ -1.13
HDAC3-209ENST00000486618 SSH3Q8TE77 659 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms