RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 SMYD4Q8IYR2 804 aaPredicted RBP29.31■■■□□ 2.28
SHOX2-204ENST00000483851 TEKT3Q9BXF9 490 aa29.31■■■□□ 2.28
SHOX2-204ENST00000483851 NRBP1Q9UHY1 535 aa29.31■■■□□ 2.28
SHOX2-204ENST00000483851 AGTPBP1Q9UPW5 1226 aa29.31■■■□□ 2.28
SHOX2-204ENST00000483851 CLEC11AQ9Y240 323 aa29.31■■■□□ 2.28
SHOX2-204ENST00000483851 ARP10275 920 aa29.3■■■□□ 2.28
SHOX2-204ENST00000483851 PABPC4Q13310 644 aaKnown RBP eCLIP29.3■■■□□ 2.28
SHOX2-204ENST00000483851 DHTKD1Q96HY7 919 aaPredicted RBP29.3■■■□□ 2.28
SHOX2-204ENST00000483851 FBXO40Q9UH90 709 aa29.3■■■□□ 2.28
SHOX2-204ENST00000483851 DNM3Q9UQ16 869 aa29.3■■■□□ 2.28
SHOX2-204ENST00000483851 R3HCC1Q9Y3T6 440 aaKnown RBP29.3■■■□□ 2.28
SHOX2-204ENST00000483851 PRCPP42785 496 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 FKBP1BP68106 108 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 ARHGEF16Q5VV41 709 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 KLHL10Q6JEL2 608 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 MOB2Q70IA6 237 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 C17orf53Q8N3J3 647 aaPredicted RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 OPTNQ96CV9 577 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 HSD17B14Q9BPX1 270 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 EIF2AK1Q9BQI3 630 aaKnown RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 KCNH7Q9NS40 1196 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 IFNKQ9P0W0 207 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 GDAQ9Y2T3 454 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 PSMA7O14818 248 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 PLA2G4BP0C869 781 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 ATP1A3P13637 1013 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 IRX3P78415 501 aaPredicted RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 MRPS9P82933 396 aaKnown RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 DHX8Q14562 1220 aaKnown RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 TRMT44Q8IYL2 757 aaKnown RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 IL31RAQ8NI17 732 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 NEK9Q8TD19 979 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 DDX12PQ92771 950 aa29.29■■■□□ 2.28
SHOX2-204ENST00000483851 XPO4Q9C0E2 1151 aaKnown RBP29.29■■■□□ 2.28
SHOX2-204ENST00000483851 SERPINC1P01008 464 aa29.28■■■□□ 2.28
SHOX2-204ENST00000483851 RIOX2Q8IUF8 465 aa29.28■■■□□ 2.28
SHOX2-204ENST00000483851 NSUN6Q8TEA1 469 aaKnown RBP29.28■■■□□ 2.28
SHOX2-204ENST00000483851 UIMC1Q96RL1 719 aa29.28■■■□□ 2.28
SHOX2-204ENST00000483851 CYP39A1Q9NYL5 469 aa29.28■■■□□ 2.28
SHOX2-204ENST00000483851 MAFGO15525 162 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 EIF2AK2P19525 551 aaKnown RBP29.27■■■□□ 2.28
SHOX2-204ENST00000483851 EPHA7Q15375 998 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 NELFBQ8WX92 580 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 TBC1D22BQ9NU19 505 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 IMPACTQ9P2X3 320 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 CTNND2Q9UQB3 1225 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 E9PMD0 336 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 EML1O00423 815 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 STAM2O75886 525 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 CDK11BP21127 795 aaKnown RBP29.27■■■□□ 2.28
SHOX2-204ENST00000483851 CCND2P30279 289 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 UBASH3AP57075 661 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 CCDC144BQ3MJ40 725 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 CDKAL1Q5VV42 579 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 VSIG10LQ86VR7 867 aa29.27■■■□□ 2.28
SHOX2-204ENST00000483851 AGO4Q9HCK5 861 aaKnown RBP29.27■■■□□ 2.28
SHOX2-204ENST00000483851 SLC12A3P55017 1021 aa29.26■■■□□ 2.27
SHOX2-204ENST00000483851 EHHADHQ08426 723 aa29.26■■■□□ 2.27
SHOX2-204ENST00000483851 MTMR1Q13613 665 aa29.26■■■□□ 2.27
SHOX2-204ENST00000483851 PLS1Q14651 629 aa29.26■■■□□ 2.27
SHOX2-204ENST00000483851 SYT2Q8N9I0 419 aaPredicted RBP29.26■■■□□ 2.27
SHOX2-204ENST00000483851 DNAJC19Q96DA6 116 aa29.26■■■□□ 2.27
SHOX2-204ENST00000483851 A1CFQ9NQ94 594 aaKnown RBP29.26■■■□□ 2.27
SHOX2-204ENST00000483851 POTEFA5A3E0 1075 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 POTEIP0CG38 1075 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 COPB2P35606 906 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 POTEGQ6S5H5 508 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 POTEEQ6S8J3 1075 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 PFASO15067 1338 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 SPAG1Q07617 926 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 TPD52L1Q16890 204 aaPredicted RBP29.25■■■□□ 2.27
SHOX2-204ENST00000483851 GPRASP2Q96D09 838 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 SLC10A4Q96EP9 437 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 CTAGE1Q96RT6 745 aa29.25■■■□□ 2.27
SHOX2-204ENST00000483851 ASCC2Q9H1I8 757 aaPredicted RBP29.25■■■□□ 2.27
SHOX2-204ENST00000483851 BICDL2A1A5D9 508 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 EYA4O95677 639 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 NR3C2P08235 984 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 STX17P56962 302 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 SNAPC2Q13487 334 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 MOGSQ13724 837 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 DYMQ7RTS9 669 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 DNERQ8NFT8 737 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 UNC45AQ9H3U1 944 aa29.24■■■□□ 2.27
SHOX2-204ENST00000483851 SAMSN1Q9NSI8 373 aaKnown RBP29.24■■■□□ 2.27
SHOX2-204ENST00000483851 SLITRK3O94933 977 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 CYP11B2P19099 503 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 OSBPP22059 807 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 STK4Q13043 487 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 MAP1SQ66K74 1059 aaPredicted RBP29.23■■■□□ 2.27
SHOX2-204ENST00000483851 FOXR2Q6PJQ5 311 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.23■■■□□ 2.27
SHOX2-204ENST00000483851 NLRX1Q86UT6 975 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 CCDC65Q8IXS2 484 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 IWS1Q96ST2 819 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 LOXHD1Q8IVV2 1947 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 DHX15O43143 795 aaKnown RBP29.23■■■□□ 2.27
SHOX2-204ENST00000483851 HERVK_113P62684 666 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 LRMPQ12912 555 aa29.23■■■□□ 2.27
SHOX2-204ENST00000483851 GPBP1Q86WP2 473 aa29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms