RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CNKSR3Q6P9H4 555 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 ZC3H18Q86VM9 953 aaKnown RBP8.76□□□□□ -1.01
USP40-213ENST00000483216 KRTAP4-12Q9BQ66 201 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 KRTAP9-2Q9BYQ4 174 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 CELF4Q9BZC1 486 aaKnown RBP8.76□□□□□ -1.01
USP40-213ENST00000483216 PCDH18Q9HCL0 1135 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 DTLQ9NZJ0 730 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 HSPBP1Q9NZL4 362 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 CBLCQ9ULV8 474 aa8.76□□□□□ -1.01
USP40-213ENST00000483216 TMA7Q9Y2S6 64 aaKnown RBP8.76□□□□□ -1.01
USP40-213ENST00000483216 TCRBV5S4A2TA0A5A2 114 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 C8BP07358 591 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 LIMS1P48059 325 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 LACTBP83111 547 aaPredicted RBP8.75□□□□□ -1.01
USP40-213ENST00000483216 CRY1Q16526 586 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 ARHGAP36Q6ZRI8 547 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 KRTAP19-1Q8IUB9 90 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 NLGN1Q8N2Q7 840 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 SMARCC2Q8TAQ2 1214 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 SH3RF2Q8TEC5 729 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 CLEC4DQ8WXI8 215 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 TOE1Q96GM8 510 aaKnown RBP8.75□□□□□ -1.01
USP40-213ENST00000483216 YIPF4Q9BSR8 244 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 CD2APQ9Y5K6 639 aa8.75□□□□□ -1.01
USP40-213ENST00000483216 B4E1Z4 1266 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 DNAJC8O75937 253 aaPredicted RBP8.74□□□□□ -1.01
USP40-213ENST00000483216 ASLP04424 464 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 CYP2C8P10632 490 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 PDE6AP16499 860 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 IGFALSP35858 605 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 CAP1Q01518 475 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 TUSC3Q13454 348 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 CR1LQ2VPA4 569 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 TKFCQ3LXA3 575 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 CIAPIN1Q6FI81 312 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 CD300LDQ6UXZ3 194 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 KCTD1Q719H9 257 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 KIAA0907Q7Z7F0 614 aaPredicted RBP8.74□□□□□ -1.01
USP40-213ENST00000483216 NLGN4XQ8N0W4 816 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 DACT3Q96B18 629 aaPredicted RBP8.74□□□□□ -1.01
USP40-213ENST00000483216 DDX11Q96FC9 970 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 FEZ1Q99689 392 aa8.74□□□□□ -1.01
USP40-213ENST00000483216 ZNF561-AS1K7EIQ3 104 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 NUAK1O60285 661 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 AMY2AP04746 511 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 AMY2BP19961 511 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 CFPP27918 469 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 DNM2P50570 870 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 NKX3-2P78367 333 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 HTRA3P83110 453 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 ABHD17CQ6PCB6 329 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.73□□□□□ -1.01
USP40-213ENST00000483216 OSTM1Q86WC4 334 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 FAM26EQ8N5C1 309 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 NINJ1Q92982 152 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 PWWP2AQ96N64 755 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 INTS7Q9NVH2 962 aaKnown RBP8.73□□□□□ -1.01
USP40-213ENST00000483216 SRPK3Q9UPE1 567 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 COQ6Q9Y2Z9 468 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 TELO2Q9Y4R8 837 aa8.73□□□□□ -1.01
USP40-213ENST00000483216 LRG1P02750 347 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 SDSP20132 328 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 STAT5AP42229 794 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 PLEKHG4Q58EX7 1191 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 TEPPQ6URK8 271 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 C1QL4Q86Z23 238 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 TMEM151BQ8IW70 566 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 RBM12BQ8IXT5 1001 aaKnown RBP8.72□□□□□ -1.01
USP40-213ENST00000483216 LRRC56Q8IYG6 542 aaPredicted RBP8.72□□□□□ -1.01
USP40-213ENST00000483216 ZSCAN18Q8TBC5 510 aaPredicted RBP8.72□□□□□ -1.01
USP40-213ENST00000483216 MAGEC2Q9UBF1 373 aaPredicted RBP8.72□□□□□ -1.01
USP40-213ENST00000483216 PMF1-BGLAPU3KQ54 211 aa8.72□□□□□ -1.01
USP40-213ENST00000483216 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.71□□□□□ -1.02
USP40-213ENST00000483216 MAN2B1O00754 1011 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 OPA1O60313 960 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 LTFP02788 710 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 PLA2G1BP04054 148 aaKnown RBP8.71□□□□□ -1.02
USP40-213ENST00000483216 JAM2P57087 298 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 FIGNQ5HY92 759 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 ZCCHC8Q6NZY4 707 aaKnown RBP8.71□□□□□ -1.02
USP40-213ENST00000483216 OVCH1Q7RTY7 1134 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 LINC00482Q8N8I6 264 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 IGSF22Q8N9C0 903 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 FNIP1Q8TF40 1166 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 CD244Q9BZW8 370 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 IRF2BPLQ9H1B7 796 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 SMURF1Q9HCE7 757 aa8.71□□□□□ -1.02
USP40-213ENST00000483216 TNPO3Q9Y5L0 923 aaKnown RBP8.71□□□□□ -1.02
USP40-213ENST00000483216 KRT15P19012 456 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 AFF3P51826 1226 aaKnown RBP8.7□□□□□ -1.02
USP40-213ENST00000483216 GRIN1Q05586 938 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 PAN2Q504Q3 1202 aaKnown RBP8.7□□□□□ -1.02
USP40-213ENST00000483216 SDE2Q6IQ49 451 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 HHIPL2Q6UWX4 724 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 DDX53Q86TM3 631 aaKnown RBP8.7□□□□□ -1.02
USP40-213ENST00000483216 PTRH1Q86Y79 214 aaKnown RBP8.7□□□□□ -1.02
USP40-213ENST00000483216 NOX5Q96PH1 765 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 GORASP1Q9BQQ3 440 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 PLAAQ9Y263 795 aa8.7□□□□□ -1.02
USP40-213ENST00000483216 KRTAP9-6A0A140TA67 174 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms