RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 H3BRB1 525 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 RFXAPO00287 272 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 NOP56O00567 594 aaKnown RBP21.36■■□□□ 1.01
CLK1-211ENST00000481641 FIBPO43427 364 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 STAM2O75886 525 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 SP4Q02446 784 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 NEDD9Q14511 834 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 ADCK5Q3MIX3 580 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 RNF20Q5VTR2 975 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 METTL7BQ6UX53 244 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 SGMS1Q86VZ5 419 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 HERC6Q8IVU3 1022 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 GPR20Q99678 358 aa21.36■■□□□ 1.01
CLK1-211ENST00000481641 TUT1Q9H6E5 874 aaKnown RBP21.36■■□□□ 1.01
CLK1-211ENST00000481641 CXCL10P02778 98 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 SMIM10L2AP0DMW4 78 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 SMIM10L2BP0DMW5 78 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 EXOSC10Q01780 885 aaKnown RBP21.35■■□□□ 1.01
CLK1-211ENST00000481641 MBTPS1Q14703 1052 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 UTP14CQ5TAP6 766 aaKnown RBP21.35■■□□□ 1.01
CLK1-211ENST00000481641 TRIM50Q86XT4 487 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 PHOSPHO2Q8TCD6 241 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 BRPF3Q9ULD4 1205 aa21.35■■□□□ 1.01
CLK1-211ENST00000481641 C17orf102A2RUQ5 167 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 CDC45O75419 566 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 BAIAP3O94812 1187 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 KCNJ6P48051 423 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 WDR5P61964 334 aaKnown RBP21.34■■□□□ 1.01
CLK1-211ENST00000481641 DEFB103AP81534 67 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 CNKSR3Q6P9H4 555 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 APOA5Q6Q788 366 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 HEATR3Q7Z4Q2 680 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 ATP6V0A1Q93050 837 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 RNPEPQ9H4A4 650 aa21.34■■□□□ 1.01
CLK1-211ENST00000481641 EPOPA6NHQ4 379 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 TREHO43280 583 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 ATP9AO75110 1047 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 THPOP40225 353 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 XRRA1Q6P2D8 792 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 SYNE3Q6ZMZ3 975 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 DHX32Q7L7V1 743 aaKnown RBP21.33■■□□□ 1.01
CLK1-211ENST00000481641 SPRED2Q7Z698 418 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 NLRX1Q86UT6 975 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 SERINC5Q86VE9 423 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 USP26Q9BXU7 913 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 PKD2L1Q9P0L9 805 aa21.33■■□□□ 1.01
CLK1-211ENST00000481641 CNTNAP5Q8WYK1 1306 aa21.32■■□□□ 1
CLK1-211ENST00000481641 ITGB5P18084 799 aa21.32■■□□□ 1
CLK1-211ENST00000481641 TAP1Q03518 808 aa21.32■■□□□ 1
CLK1-211ENST00000481641 WWC2Q6AWC2 1192 aa21.32■■□□□ 1
CLK1-211ENST00000481641 MICALL1Q8N3F8 863 aa21.32■■□□□ 1
CLK1-211ENST00000481641 SETD4Q9NVD3 440 aa21.32■■□□□ 1
CLK1-211ENST00000481641 PCDHA6Q9UN73 950 aa21.32■■□□□ 1
CLK1-211ENST00000481641 PCDHA8Q9Y5H6 950 aa21.32■■□□□ 1
CLK1-211ENST00000481641 LCHNA4D1U4 455 aa21.31■■□□□ 1
CLK1-211ENST00000481641 KIF28PB7ZC32 967 aa21.31■■□□□ 1
CLK1-211ENST00000481641 TLL1O43897 1013 aa21.31■■□□□ 1
CLK1-211ENST00000481641 PARNO95453 639 aaKnown RBP21.31■■□□□ 1
CLK1-211ENST00000481641 CPA1P15085 419 aa21.31■■□□□ 1
CLK1-211ENST00000481641 HOXC8P31273 242 aa21.31■■□□□ 1
CLK1-211ENST00000481641 RTN1Q16799 776 aa21.31■■□□□ 1
CLK1-211ENST00000481641 TSGA10IPQ3SY00 556 aa21.31■■□□□ 1
CLK1-211ENST00000481641 TYW1BQ6NUM6 668 aa21.31■■□□□ 1
CLK1-211ENST00000481641 SENP7Q9BQF6 1050 aa21.31■■□□□ 1
CLK1-211ENST00000481641 OSBPL7Q9BZF2 842 aa21.31■■□□□ 1
CLK1-211ENST00000481641 SPDYE3A6NKU9 549 aa21.3■■□□□ 1
CLK1-211ENST00000481641 RSPH10B2B2RC85 870 aa21.3■■□□□ 1
CLK1-211ENST00000481641 ZBTB43O43298 467 aa21.3■■□□□ 1
CLK1-211ENST00000481641 RSPH10BP0C881 870 aa21.3■■□□□ 1
CLK1-211ENST00000481641 KCNA2P16389 499 aa21.3■■□□□ 1
CLK1-211ENST00000481641 FUT2Q10981 343 aa21.3■■□□□ 1
CLK1-211ENST00000481641 ARNTL2Q8WYA1 636 aa21.3■■□□□ 1
CLK1-211ENST00000481641 GPRASP2Q96D09 838 aa21.3■■□□□ 1
CLK1-211ENST00000481641 PGBD1Q96JS3 809 aa21.3■■□□□ 1
CLK1-211ENST00000481641 RBM28Q9NW13 759 aaKnown RBP21.3■■□□□ 1
CLK1-211ENST00000481641 UBIAD1Q9Y5Z9 338 aa21.3■■□□□ 1
CLK1-211ENST00000481641 V9GY48 417 aaPredicted RBP21.3■■□□□ 1
CLK1-211ENST00000481641 REV3LO60673 3130 aa21.3■■□□□ 1
CLK1-211ENST00000481641 SPTBN5Q9NRC6 3674 aaKnown RBP21.3■■□□□ 1
CLK1-211ENST00000481641 KLF18A0A0U1RQI7 1052 aa21.29■■□□□ 1
CLK1-211ENST00000481641 ABHD14A-ACY1A0A1B0GW23 586 aa21.29■■□□□ 1
CLK1-211ENST00000481641 LGR5O75473 907 aa21.29■■□□□ 1
CLK1-211ENST00000481641 CTSHP09668 335 aa21.29■■□□□ 1
CLK1-211ENST00000481641 IKBKEQ14164 716 aa21.29■■□□□ 1
CLK1-211ENST00000481641 KRT40Q6A162 431 aa21.29■■□□□ 1
CLK1-211ENST00000481641 FAM117BQ6P1L5 589 aa21.29■■□□□ 1
CLK1-211ENST00000481641 ZBED2Q9BTP6 218 aa21.29■■□□□ 1
CLK1-211ENST00000481641 FAM217BQ9NTX9 383 aaPredicted RBP21.29■■□□□ 1
CLK1-211ENST00000481641 NAP1L2Q9ULW6 460 aaPredicted RBP21.29■■□□□ 1
CLK1-211ENST00000481641 PRRC2BQ5JSZ5 2229 aaKnown RBP21.29■■□□□ 1
CLK1-211ENST00000481641 TRANK1O15050 2925 aa21.28■■□□□ 1
CLK1-211ENST00000481641 GSTTP1A0A1W2PQM5 241 aa21.28■■□□□ 1
CLK1-211ENST00000481641 GOLGA8AA7E2F4 631 aa21.28■■□□□ 1
CLK1-211ENST00000481641 GOLGA8BA8MQT2 603 aa21.28■■□□□ 1
CLK1-211ENST00000481641 CDC27P30260 824 aa21.28■■□□□ 1
CLK1-211ENST00000481641 TCF7P36402 384 aaPredicted RBP21.28■■□□□ 1
CLK1-211ENST00000481641 NAPAP54920 295 aa21.28■■□□□ 1
CLK1-211ENST00000481641 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.28■■□□□ 1
CLK1-211ENST00000481641 DBF4BQ8NFT6 615 aa21.28■■□□□ 1
CLK1-211ENST00000481641 ZNF215Q9UL58 517 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms