RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	PPP1R13L	Q8WUF5	828 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	VTI1A	Q96AJ9	217 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	GPRASP2	Q96D09	838 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	GLT1D1	Q96MS3	346 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	SPATA33	Q96N06	139 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	UIMC1	Q96RL1	719 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	MXRA8	Q9BRK3	442 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	LLPH	Q9BRT6	129 aa	Known RBP	11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	JADE2	Q9NQC1	790 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	ATP11B	Q9Y2G3	1177 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095		A6NJR5	290 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	FAM86B1	E9PN63	330 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095		M0R2N6	131 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	EVI5	O60447	810 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	ATP9A	O75110	1047 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	MMP3	P08254	477 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	FAM86B2	P0C5J1	330 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	AR	P10275	920 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	TGFB3	P10600	412 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	MCM2	P49736	904 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	RTP1	P59025	263 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	CHMP4BP1	P59074	171 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	NR5A1	Q13285	461 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	LAMC2	Q13753	1193 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	TRIM29	Q14134	588 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	HSDL1	Q3SXM5	330 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	CEP55	Q53EZ4	464 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	BRDT	Q58F21	947 aa	Predicted RBP	11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	MYSM1	Q5VVJ2	828 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	KRT40	Q6A162	431 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	GALNT17	Q6IS24	598 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	SLC39A5	Q6ZMH5	540 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	CYFIP1	Q7L576	1253 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	FAM177A1	Q8N128	213 aa	Predicted RBP	11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	TBCK	Q8TEA7	893 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	CRYGN	Q8WXF5	182 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	MLXIP	Q9HAP2	919 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	TELO2	Q9Y4R8	837 aa		11.7	□□□□□ -0.54
HDAC6-222	ENST00000478095	CCDC194	A0A1B0GVG4	234 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	FAM205C	A6NFA0	338 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	PQBP1	O60828	265 aa	Known RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	MMP1	P03956	469 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	CYP3A4	P08684	503 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	ZNF286B	P0CG31	522 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	KCNA2	P16389	499 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	KRT2	P35908	639 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	HMGN5	P82970	282 aa	Known RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	PURA	Q00577	322 aa	Known RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	NEDD9	Q14511	834 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	NONO	Q15233	471 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	INF2	Q27J81	1249 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	EARS2	Q5JPH6	523 aa	Known RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	PIK3AP1	Q6ZUJ8	805 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	KRT25	Q7Z3Z0	450 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	PLA2G4D	Q86XP0	818 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	DIS3L2	Q8IYB7	885 aa	Known RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	IL27	Q8NEV9	243 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	PPTC7	Q8NI37	304 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	EMID1	Q96A84	441 aa	Predicted RBP	11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	CDHR1	Q96JP9	859 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	C8orf76	Q96K31	380 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	BRMS1	Q9HCU9	246 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	KCNH7	Q9NS40	1196 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	POLR3E	Q9NVU0	708 aa		11.69	□□□□□ -0.54
HDAC6-222	ENST00000478095	FRMPD3	Q5JV73	1810 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	IGLV3-22	A0A075B6J6	115 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095		A0A0U1RQG5	324 aa	Predicted RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	BTBD18	B2RXH4	712 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	DDX39A	O00148	427 aa	Known RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	MEIS1	O00470	390 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	NOP56	O00567	594 aa	Known RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	EDIL3	O43854	480 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	CABYR	O75952	493 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	TDP2	O95551	362 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	SYN1	P17600	705 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	PRR16	Q569H4	304 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	METTL7B	Q6UX53	244 aa		11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	MTG1	Q9BT17	334 aa	Predicted RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	AGO4	Q9HCK5	861 aa	Known RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	11.68	□□□□□ -0.54
HDAC6-222	ENST00000478095	GRIN2D	O15399	1336 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	ELP1	O95163	1332 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095		H0YGN5	161 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	ARVCF	O00192	962 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	GJB2	P29033	226 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	CIITA	P33076	1130 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	SET	Q01105	290 aa	Predicted RBP	11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	TLE2	Q04725	743 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	ITGB3BP	Q13352	177 aa	Predicted RBP	11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	ITGA7	Q13683	1181 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	SNX17	Q15036	470 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	DGKD	Q16760	1214 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	LETM2	Q2VYF4	491 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	UTP14C	Q5TAP6	766 aa	Known RBP	11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	TRIM50	Q86XT4	487 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	KAT2B	Q92831	832 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	TNFRSF25	Q93038	417 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	GPR20	Q99678	358 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	SENP7	Q9BQF6	1050 aa		11.67	□□□□□ -0.54
HDAC6-222	ENST00000478095	JPH1	Q9HDC5	661 aa	Predicted RBP	11.67	□□□□□ -0.54

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