RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	NLRP2	Q9NX02	1062 aa		5.4	□□□□□ -1.54
PTCD3-212	ENST00000477520	ADAM21	Q9UKJ8	722 aa		5.4	□□□□□ -1.54
PTCD3-212	ENST00000477520	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	5.4	□□□□□ -1.54
PTCD3-212	ENST00000477520	TTC41P	Q6P2S7	1318 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520		A0A1W2PP64	1363 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520	SBNO1	A3KN83	1393 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520	RTL1	A6NKG5	1358 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520	AATK	Q6ZMQ8	1374 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520	USP6	P35125	1406 aa		5.4	□□□□□ -1.55
PTCD3-212	ENST00000477520	AKAP12	Q02952	1782 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520		A0A1B0GUA9	196 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	PRAMEF27	A3QJZ7	478 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ERC2	O15083	957 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	SRGAP3	O43295	1099 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	FBXO24	O75426	580 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	SYN1	P17600	705 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	PTGS1	P23219	599 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	MCM3	P25205	808 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	OAS2	P29728	719 aa	Known RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	PTPN11	Q06124	597 aa	Predicted RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TRAF1	Q13077	416 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	NFIX	Q14938	502 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	SLMAP	Q14BN4	828 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ELF2	Q15723	593 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAP3K11	Q16584	847 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	LRRFIP1	Q32MZ4	808 aa	Known RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TIGD5	Q53EQ6	642 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	LLGL2	Q6P1M3	1020 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	LETMD1	Q6P1Q0	360 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TPTE2	Q6XPS3	522 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	GBP6	Q6ZN66	633 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZNF605	Q86T29	641 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	KIAA1328	Q86T90	577 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ITPRIP	Q8IWB1	547 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TEX11	Q8IYF3	940 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	MARCH10	Q8NA82	808 aa	Predicted RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	BICD2	Q8TD16	824 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	FBXO41	Q8TF61	875 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	RABGGTA	Q92696	567 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ELMO3	Q96BJ8	720 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ALKBH8	Q96BT7	664 aa	Known RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TMX3	Q96JJ7	454 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	MPHOSPH8	Q99549	860 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	SH3GL3	Q99963	347 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	THUMPD2	Q9BTF0	503 aa	Known RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TRIM5	Q9C035	493 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	VEZT	Q9HBM0	779 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	GCM1	Q9NP62	436 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	BATF3	Q9NR55	127 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	GNL3L	Q9NVN8	582 aa	Known RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ORC3	Q9UBD5	711 aa	Predicted RBP	5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	DNAI1	Q9UI46	699 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	SH3BP1	Q9Y3L3	701 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ROBO1	Q9Y6N7	1651 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	TTC21B	Q7Z4L5	1316 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	ARHGEF10	O15013	1369 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	NSD2	O96028	1365 aa		5.39	□□□□□ -1.55
PTCD3-212	ENST00000477520	NHSL1	Q5SYE7	1610 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	AHDC1	Q5TGY3	1603 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MYOM1	P52179	1685 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MON2	Q7Z3U7	1717 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	GOLGA6L19	H0YKK7	550 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	U2SURP	O15042	1029 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	CHUK	O15111	745 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAFG	O15525	162 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	ERLIN2	O94905	339 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	NBPF7	P0C2Y1	421 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	SKIL	P12757	684 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	GCFC2	P16383	781 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MNAT1	P51948	309 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MRPL12	P52815	198 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	RWDD2B	P57060	319 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	NFKB2	Q00653	900 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	SNW1	Q13573	536 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	PDCD2	Q16342	344 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	ARHGAP29	Q52LW3	1261 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	HSP90B2P	Q58FF3	399 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	TTC22	Q5TAA0	569 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	ANKRD45	Q5TZF3	282 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	RBM43	Q6ZSC3	357 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	HDX	Q7Z353	690 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	BRAP	Q7Z569	592 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	TAX1BP1	Q86VP1	789 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	CCAR2	Q8N163	923 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	NEK11	Q8NG66	645 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	CTCFL	Q8NI51	663 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	FAM71B	Q8TC56	605 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAGEC3	Q8TD91	643 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	RTF1	Q92541	710 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	SMARCE1	Q969G3	411 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MKL1	Q969V6	931 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	MIEF2	Q96C03	454 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	COG3	Q96JB2	828 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	SGPP1	Q9BX95	441 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	LNPK	Q9C0E8	428 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	HOMER3	Q9NSC5	361 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	SPATA31A3	Q5VYP0	1347 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	RPAP1	Q9BWH6	1393 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	TNS3	Q68CZ2	1445 aa		5.38	□□□□□ -1.55

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