RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 USP17L6PQ6QN14 398 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 METTL7BQ6UX53 244 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TMEM87BQ96K49 555 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 GPR20Q99678 358 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ESYT1Q9BSJ8 1104 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MYL10Q9BUA6 226 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 USP26Q9BXU7 913 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TUT1Q9H6E5 874 aaKnown RBP14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MLXIPQ9HAP2 919 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TELO2Q9Y4R8 837 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LCHNA4D1U4 455 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 FIBPO43427 364 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 PRC1O43663 620 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SORBS3O60504 671 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 EFCAB14O75071 495 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 PLEKHA8P1O95397 391 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 BMP1P13497 986 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 KIF5BP33176 963 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 MCM5P33992 734 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 NEDD9Q14511 834 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GNPTABQ3T906 1256 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CYFIP1Q7L576 1253 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TMCO2Q7Z6W1 182 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SGMS1Q86VZ5 419 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RRP36Q96EU6 259 aaKnown RBP14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CERS4Q9HA82 394 aa14.14□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TNFRSF10AO00220 468 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TREHO43280 583 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TLL1O43897 1013 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 LGR5O75473 907 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SMIM10L2AP0DMW4 78 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SMIM10L2BP0DMW5 78 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 KCNJ6P48051 423 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GNAQP50148 359 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 IKBKEQ14164 716 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 PLEKHG4Q58EX7 1191 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CREB3L3Q68CJ9 461 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 KRT40Q6A162 431 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CTCFLQ8NI51 663 aaPredicted RBP14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 PIBF1Q8WXW3 757 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RAD9AQ99638 391 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 OSBPL7Q9BZF2 842 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RTEL1Q9NZ71 1219 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SIP14410 1827 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 EMSYQ7Z589 1322 aa14.13□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 C17orf102A2RUQ5 167 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RSPH10B2B2RC85 870 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RSPH10BP0C881 870 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ERVK-21P61565 698 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GRB10Q13322 594 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CASC1Q6TDU7 716 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 DBF4BQ8NFT6 615 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ARNTL2Q8WYA1 636 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ATP6V0A1Q93050 837 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 LMCD1Q9NZU5 365 aa14.12□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 COL4A4P53420 1690 aaPredicted RBP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ATP9AO75110 1047 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CAND2O75155 1236 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CALM1P0DP23 149 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CALM2P0DP24 149 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CALM3P0DP25 149 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 KCNA2P16389 499 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ITGB5P18084 799 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 THPOP40225 353 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 HTRA4P83105 476 aaPredicted RBP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 EXOSC10Q01780 885 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 FUT2Q10981 343 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TSGA10IPQ3SY00 556 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 FAM26DQ5JW98 314 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RPAINQ86UA6 219 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CMTR1Q8N1G2 835 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 FANCBQ8NB91 859 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SMARCC2Q8TAQ2 1214 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SP7Q8TDD2 431 aaPredicted RBP14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 ADAMTS19Q8TE59 1207 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GPRASP2Q96D09 838 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 PSTPIP2Q9H939 334 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 UBIAD1Q9Y5Z9 338 aa14.11□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 LINC01553A4QN01 128 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CCDC69A6NI79 296 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 NOP56O00567 594 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GTPBP6O43824 516 aaPredicted RBP14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 RXRAP19793 462 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TFF2Q03403 129 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 BMP2KLQ5H9B9 411 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TMTC3Q6ZXV5 915 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TRIM50Q86XT4 487 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GIMAP8Q8ND71 665 aaPredicted RBP14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 CUL5Q93034 780 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TSPYL2Q9H2G4 693 aaPredicted RBP14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SUGCTQ9HAC7 445 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SETD4Q9NVD3 440 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 SEC63Q9UGP8 760 aaKnown RBP14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 MYO7AQ13402 2215 aa14.1□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TTC3P53804 2025 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 GSTTP1A0A1W2PQM5 241 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 MAFGO15525 162 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 NLRX1Q86UT6 975 aa14.09□□□□□ -0.15
MSH5-SAPCD1-205ENST00000476085 TEX2Q8IWB9 1127 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms