RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 NIPA1Q7RTP0 329 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 MCF2L2Q86YR7 1114 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 CCDC65Q8IXS2 484 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 C12orf42Q96LP6 360 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 TUBGCP2Q9BSJ2 902 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 TUFT1Q9NNX1 390 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 DNM3Q9UQ16 869 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 FRMPD4Q14CM0 1322 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 EML1O00423 815 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 PTPRAP18433 802 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 CASP14P31944 242 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 FXR1P51114 621 aaKnown RBP eCLIP13.6□□□□□ -0.23
SYNE1-222ENST00000474655 UBXN1Q04323 297 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 MTMR2Q13614 643 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 FAM26FQ5R3K3 315 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 GPBP1Q86WP2 473 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 REXO1L1PQ8IX06 675 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 TRPM4Q8TD43 1214 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 UIMC1Q96RL1 719 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 EIF2AK1Q9BQI3 630 aaKnown RBP13.6□□□□□ -0.23
SYNE1-222ENST00000474655 AS3MTQ9HBK9 375 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 PAPPA2Q9BXP8 1791 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 DYNC1I1O14576 645 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 ZSCAN12O43309 604 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 FGFR1OPO95684 399 aaKnown RBP13.6□□□□□ -0.23
SYNE1-222ENST00000474655 PSMC6P62333 389 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 MIIPQ5JXC2 388 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 LRCH2Q5VUJ6 765 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 KRT26Q7Z3Y9 468 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 MYOCDQ8IZQ8 938 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 ZNF280CQ8ND82 737 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 CNOT6LQ96LI5 555 aaKnown RBP13.6□□□□□ -0.23
SYNE1-222ENST00000474655 WDR11Q9BZH6 1224 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 SSC5DA1L4H1 1573 aa13.6□□□□□ -0.23
SYNE1-222ENST00000474655 WDR90Q96KV7 1748 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 NFIBO00712 420 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 EYA4O95677 639 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 TPM1P09493 284 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 HIRAP54198 1017 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-222ENST00000474655 SPP2Q13103 211 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 GIT2Q14161 759 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 NOL9Q5SY16 702 aaKnown RBP13.59□□□□□ -0.23
SYNE1-222ENST00000474655 LRRC55Q6ZSA7 311 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 GLIS3Q8NEA6 775 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 KLRG1Q96E93 195 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 ERGIC2Q96RQ1 377 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 RIT2Q99578 217 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 MXRA8Q9BRK3 442 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 TANGO6Q9C0B7 1094 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 RPAP3Q9H6T3 665 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-222ENST00000474655 COL20A1Q9P218 1284 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 ADAMTS5Q9UNA0 930 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 PPP2R2CQ9Y2T4 447 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 PTPRFP10586 1907 aa13.59□□□□□ -0.23
SYNE1-222ENST00000474655 GOLGA6L9A6NEM1 432 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 C19orf81C9J6K1 198 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 RIOK3O14730 519 aaKnown RBP13.58□□□□□ -0.23
SYNE1-222ENST00000474655 FLOT1O75955 427 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 SLITRK3O94933 977 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 SSBP05455 408 aaKnown RBP eCLIP13.58□□□□□ -0.23
SYNE1-222ENST00000474655 DGKZQ13574 1117 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 PCNX4Q63HM2 1172 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 RETREG2Q8NC44 543 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 WRNIP1Q96S55 665 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 TTYH3Q9C0H2 523 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 PICK1Q9NRD5 415 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 ABHD10Q9NUJ1 306 aa13.58□□□□□ -0.23
SYNE1-222ENST00000474655 LOC285556D6RIA3 1793 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 RNF225M0QZC1 329 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-222ENST00000474655 VWA5AO00534 786 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 ZBED4O75132 1171 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 KIF20AO95235 890 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 ARP10275 920 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 MUM1L1Q5H9M0 696 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 FIGNQ5HY92 759 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 TRIM65Q6PJ69 517 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 ZC3H3Q8IXZ2 948 aaKnown RBP13.58□□□□□ -0.24
SYNE1-222ENST00000474655 KIF18AQ8NI77 898 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 CPLX3Q8WVH0 158 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 ZKSCAN4Q969J2 545 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-222ENST00000474655 TSG101Q99816 390 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 ZNF577Q9BSK1 485 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 KCTD10Q9H3F6 313 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 RAVER2Q9HCJ3 691 aaKnown RBP13.58□□□□□ -0.24
SYNE1-222ENST00000474655 GGA3Q9NZ52 723 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 CAPN11Q9UMQ6 739 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 UBIAD1Q9Y5Z9 338 aa13.58□□□□□ -0.24
SYNE1-222ENST00000474655 NPHP3-ACAD11A0A0J9YXS1 232 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 IPO5O00410 1097 aaKnown RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 CTIFO43310 598 aaKnown RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 GAS7O60861 476 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 ALAS1P13196 640 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 PRKCSHP14314 528 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 ITGB5P18084 799 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 EPS15P42566 896 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 OAZ1P54368 228 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 MARSP56192 900 aaKnown RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 ETF1P62495 437 aaKnown RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 UBXN2AP68543 259 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 FKBP3Q00688 224 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms