RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 GTPBP6O43824 516 aaPredicted RBP12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 LGALS2P05162 132 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 POU3F3P20264 500 aaPredicted RBP12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 MRPS5P82675 430 aaKnown RBP12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 TAP1Q03518 808 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 IKBKEQ14164 716 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 HIC1Q14526 733 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 PCNX4Q63HM2 1172 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 CREB3L3Q68CJ9 461 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 XRRA1Q6P2D8 792 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 USP17L6PQ6QN14 398 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 CYFIP1Q7L576 1253 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 SERINC5Q86VE9 423 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 MICALL1Q8N3F8 863 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 SRBD1Q8N5C6 995 aaKnown RBP12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 ATP6V0A1Q93050 837 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 WNT8BQ93098 351 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 SENP7Q9BQF6 1050 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 ZBED2Q9BTP6 218 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 BCAS3Q9H6U6 928 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 CERS4Q9HA82 394 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 ANO2Q9NQ90 1003 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 TSHZ2Q9NRE2 1034 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 SLC12A7Q9Y666 1083 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 VCANP13611 3396 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 CHD7Q9P2D1 2997 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 LOXHD1Q8IVV2 1947 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 CHD9Q3L8U1 2897 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 EMSYQ7Z589 1322 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 RFXAPO00287 272 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 PLEKHA8P1O95397 391 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 SMIM10L2AP0DMW4 78 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 SMIM10L2BP0DMW5 78 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 HOXC8P31273 242 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 THPOP40225 353 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 SEMA3FQ13275 785 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 C8orf34Q49A92 452 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 RNF20Q5VTR2 975 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 TRAF7Q6Q0C0 670 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 NLRX1Q86UT6 975 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 CMTR1Q8N1G2 835 aaKnown RBP12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 FANCBQ8NB91 859 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 GIMAP8Q8ND71 665 aaPredicted RBP12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 ARNTL2Q8WYA1 636 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 ASB2Q96Q27 587 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 GPR20Q99678 358 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 RNPEPQ9H4A4 650 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 PSTPIP2Q9H939 334 aa12.73□□□□□ -0.37
SEMA4D-216ENST00000474258 EPOPA6NHQ4 379 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 RSPH10B2B2RC85 870 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 LGR5O75473 907 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 ARHGEF15O94989 841 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 RSPH10BP0C881 870 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 GNAT1P11488 350 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 RXRAP19793 462 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 DEFB103AP81534 67 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 SYNE3Q6ZMZ3 975 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 CDHR1Q96JP9 859 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 RAD9AQ99638 391 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 LRRC2Q9BYS8 371 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 MTCH2Q9Y6C9 303 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 NLRC5Q86WI3 1866 aa12.72□□□□□ -0.37
SEMA4D-216ENST00000474258 COL4A4P53420 1690 aaPredicted RBP12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 TREHO43280 583 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 CAND2O75155 1236 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 GJB5O95377 273 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 COL9A3Q14050 684 aaPredicted RBP12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 MBTPS1Q14703 1052 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 SKIV2LQ15477 1246 aaKnown RBP12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 TCTN1Q2MV58 587 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 TMCO2Q7Z6W1 182 aaPredicted RBP12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 SGMS1Q86VZ5 419 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 CCDC82Q8N4S0 544 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 IL27Q8NEV9 243 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 GPRASP2Q96D09 838 aa12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 ZNF215Q9UL58 517 aaPredicted RBP12.71□□□□□ -0.37
SEMA4D-216ENST00000474258 MYH9P35579 1960 aaKnown RBP12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 hCG_1642624A0A1W2PR95 340 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 LCHNA4D1U4 455 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 TNFRSF10AO00220 468 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 SP4Q02446 784 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 AAK1Q2M2I8 961 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 PLEKHG4Q58EX7 1191 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 UTP14CQ5TAP6 766 aaKnown RBP12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 TMTC3Q6ZXV5 915 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 MICU3Q86XE3 530 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 RAB11FIP4Q86YS3 637 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 DBF4BQ8NFT6 615 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 NEK1Q96PY6 1258 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 SETD4Q9NVD3 440 aa12.7□□□□□ -0.38
SEMA4D-216ENST00000474258 EVPLQ92817 2033 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 SPDYE3A6NKU9 549 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 MAFGO15525 162 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 AMHP03971 560 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 GRB10Q13322 594 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 UBE2SQ16763 222 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 HEATR3Q7Z4Q2 680 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 TRIM50Q86XT4 487 aa12.69□□□□□ -0.38
SEMA4D-216ENST00000474258 SEPT1Q8WYJ6 367 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms