RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HS3ST3A1Q9Y663 406 aa5.96□□□□□ -1.46
CCDC88A-212ENST00000474059 MUSKO15146 869 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 SNRPB2P08579 225 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 HOXC12P31275 282 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 NCAPHQ15003 741 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 PPIL6Q8IXY8 311 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 TMEM145Q8NBT3 493 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 GNRHR2Q96P88 292 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 BCL11AQ9H165 835 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 DEF6Q9H4E7 631 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 MYOTQ9UBF9 498 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 ASH2LQ9UBL3 628 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 NPFFR2Q9Y5X5 522 aa5.95□□□□□ -1.46
CCDC88A-212ENST00000474059 SLC35F1Q5T1Q4 408 aa5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 TCTN3Q6NUS6 607 aa5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 TRMT10BQ6PF06 316 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 C6orf15Q6UXA7 325 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 NT5DC4Q86YG4 428 aa5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 PPARGC1AQ9UBK2 798 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 FTSJ1Q9UET6 329 aa5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 COA3Q9Y2R0 106 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-212ENST00000474059 MSCO60682 206 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 KNG1P01042 644 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 CSF2RBP32927 897 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 LTBRP36941 435 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 LSAMPQ13449 338 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 CHRNA2Q15822 529 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 Q6ZUG5 572 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 TTLL11Q8NHH1 800 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 MICAL1Q8TDZ2 1067 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 CLEC4DQ8WXI8 215 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 PPP1R14AQ96A00 147 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 SEC16BQ96JE7 1060 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 CLDND1Q9NY35 253 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 ZDHHC9Q9Y397 364 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 TCAF1Q9Y4C2 921 aa5.93□□□□□ -1.46
CCDC88A-212ENST00000474059 PLSCR1O15162 318 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 MYO1BO43795 1136 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 NAT2P11245 290 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 ANAPC16Q96DE5 110 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 AJUBAQ96IF1 538 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 SMOC1Q9H4F8 434 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 EPB41L1Q9H4G0 881 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 TELO2Q9Y4R8 837 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 SLC4A7Q9Y6M7 1214 aa5.92□□□□□ -1.46
CCDC88A-212ENST00000474059 SUSD5O60279 629 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 CYP7B1O75881 506 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 GRIA2P42262 883 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 MIIPQ5JXC2 388 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 RBM12BQ8IXT5 1001 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 PHOSPHO1Q8TCT1 267 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 CPLX3Q8WVH0 158 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 ZNF503Q96F45 646 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 WRNIP1Q96S55 665 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 SEC61A2Q9H9S3 476 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 BARX1Q9HBU1 254 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 JADE2Q9NQC1 790 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 KCND1Q9NSA2 647 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 PTPN22Q9Y2R2 807 aa5.91□□□□□ -1.46
CCDC88A-212ENST00000474059 NPIPB8E9PQR5 432 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 SMAD7O15105 426 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 CPP00450 1065 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 GPR155Q7Z3F1 870 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 FAM178BQ8IXR5 827 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 PIP4K2CQ8TBX8 421 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 JAM3Q9BX67 310 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 PDGFDQ9GZP0 370 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 ACBD3Q9H3P7 528 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 SEMA4AQ9H3S1 761 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 DLL4Q9NR61 685 aa5.9□□□□□ -1.46
CCDC88A-212ENST00000474059 SLC27A2O14975 620 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 DGKIO75912 1065 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 IL18BPO95998 194 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 LTFP02788 710 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 GRIN1Q05586 938 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 FOXE3Q13461 319 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 SMAD2Q15796 467 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 CYP4F22Q6NT55 531 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 RNF207Q6ZRF8 634 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 Q6ZSN1 163 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 USP51Q70EK9 711 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 RALYLQ86SE5 291 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 STRIP2Q9ULQ0 834 aa5.89□□□□□ -1.47
CCDC88A-212ENST00000474059 CKMP06732 381 aa5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 SV2CQ496J9 727 aa5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 HABP4Q5JVS0 413 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 KATNBL1Q9H079 304 aa5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 SLC6A20Q9NP91 592 aa5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 ZFP69BQ9UJL9 534 aa5.88□□□□□ -1.47
CCDC88A-212ENST00000474059 ZNF888P0CJ79 500 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 FAHP16930 419 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 ATF4P18848 351 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 DUSP8Q13202 625 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 SKIDA1Q1XH10 827 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 VASNQ6EMK4 673 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 CHAMP1Q96JM3 812 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 CCDC140Q96MF4 163 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 LRRC37BQ96QE4 947 aa5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 ZFR2Q9UPR6 939 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-212ENST00000474059 NARSO43776 548 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms