RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 DMAP1Q9NPF5 467 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TBK1Q9UHD2 729 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TMCO1Q9UM00 188 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 CCDC22O60826 627 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 SEC24DO94855 1032 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 LSP1P33241 339 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 RALGDSQ12967 914 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 SFR1Q86XK3 245 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CCDC8Q9H0W5 538 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 TMEM245Q9H330 911 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 LRP2BPQ9P2M1 347 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CFAP69A5D8W1 941 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 GNB5O14775 395 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 GSTA4O15217 222 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 POLR2DO15514 142 aaKnown RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 ZNF18P17022 549 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 DSG1Q02413 1049 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 ARMC3Q5W041 872 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CNNM4Q6P4Q7 775 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CHCHD4Q8N4Q1 142 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 FAM207AQ9NSI2 230 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 APOBEC2Q9Y235 224 aaKnown RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 IGF2BP3O00425 579 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 ATP4AP20648 1035 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CASP2P42575 452 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 PEX5P50542 639 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 ARFIP2P53365 341 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 NEK10Q6ZWH5 1172 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 OTUD6AQ7L8S5 288 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 TMTC2Q8N394 836 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 NR1I2O75469 434 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CLK1P49759 484 aaKnown RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 PMS2P54278 862 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 PRAMEP78395 509 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 PDE4DQ08499 809 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 C15orf59Q2T9L4 293 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-210ENST00000473258 RUNDC3AQ59EK9 446 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 TOGARAM2Q6ZUX3 1019 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 RFX8Q6ZV50 586 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 CYFIP2Q96F07 1278 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 SMARCAD1Q9H4L7 1026 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 MAPK8IP1Q9UQF2 711 aa9.67□□□□□ -0.86
COL6A3-210ENST00000473258 PPIP5K2O43314 1243 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PFKFB2O60825 505 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 GSNP06396 782 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 S100A6P06703 90 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 COPB2P35606 906 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TMPOP42166 694 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PPP2R5DQ14738 602 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 KRT79Q5XKE5 535 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 FBXL13Q8NEE6 735 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TRAPPC9Q96Q05 1148 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 CDC5LQ99459 802 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 CNPY3Q9BT09 278 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 USP15Q9Y4E8 981 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 RBM47A0AV96 593 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 DTNBO60941 627 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ECEL1O95672 775 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ALOX15P16050 662 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 MMP14P50281 582 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ADAT2Q7Z6V5 191 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 NME9Q86XW9 330 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TGS1Q96RS0 853 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PRDM16Q9HAZ2 1276 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 IDH3BO43837 385 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PDHBP11177 359 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 GSTT1P30711 240 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 HAND2P61296 217 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 NAA35Q5VZE5 725 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM67Q6ZTA4 783 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 CENPUQ71F23 418 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 MICU2Q8IYU8 434 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ZKSCAN4Q969J2 545 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ACAP3Q96P50 834 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 NT5C3AQ9H0P0 336 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ADNPQ9H2P0 1102 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 DDX18Q9NVP1 670 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 IVNS1ABPQ9Y6Y0 642 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 ABCC11Q96J66 1382 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 EXOC1LA0A1B0GW35 172 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TTI1O43156 1089 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 GARSP41250 739 aaKnown RBP9.66□□□□□ -0.86
COL6A3-210ENST00000473258 HSPA13P48723 471 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PTGISQ16647 500 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 RTN1Q16799 776 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 PLEKHM3Q6ZWE6 761 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 SCYL1Q96KG9 808 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 TUFT1Q9NNX1 390 aa9.66□□□□□ -0.86
COL6A3-210ENST00000473258 SPDYE3A6NKU9 549 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 ATF4P18848 351 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 RGS2P41220 211 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 MAGEA8P43361 318 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 FAM69CQ0P6D2 419 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 DNAL1Q4LDG9 190 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CYP4F22Q6NT55 531 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 DTHD1Q6ZMT9 781 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 ZNF354CQ86Y25 554 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 RSAD2Q8WXG1 361 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 HDAC11Q96DB2 347 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms