RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ZNF589Q86UQ0 364 aaPredicted RBP21.48■■□□□ 1.03
SHH-205ENST00000472308 POP1Q99575 1024 aaKnown RBP21.48■■□□□ 1.03
SHH-205ENST00000472308 PDCD2LQ9BRP1 358 aa21.48■■□□□ 1.03
SHH-205ENST00000472308 MRPL11Q9Y3B7 192 aaKnown RBP21.48■■□□□ 1.03
SHH-205ENST00000472308 SMIM10L2AP0DMW4 78 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 SMIM10L2BP0DMW5 78 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 HSD17B4P51659 736 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 GHRHRQ02643 423 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 SMAD4Q13485 552 aaKnown RBP21.47■■□□□ 1.03
SHH-205ENST00000472308 MFSD6Q6ZSS7 791 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 PNMA1Q8ND90 353 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 IL31RAQ8NI17 732 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 EDAQ92838 391 aa21.47■■□□□ 1.03
SHH-205ENST00000472308 GPKOWQ92917 476 aaPredicted RBP eCLIP21.47■■□□□ 1.03
SHH-205ENST00000472308 RC3H2Q9HBD1 1191 aaKnown RBP21.47■■□□□ 1.03
SHH-205ENST00000472308 LINC01565O15544 149 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 CAND2O75155 1236 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 CFBP00751 764 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 PCP11498 1178 aaKnown RBP21.46■■□□□ 1.03
SHH-205ENST00000472308 BMP8AQ7Z5Y6 402 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 DGKHQ86XP1 1220 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 FIBCD1Q8N539 461 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 EVI5LQ96CN4 794 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 IL17RAQ96F46 866 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 LMAN2LQ9H0V9 348 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 RNPEPQ9H4A4 650 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 BCAS3Q9H6U6 928 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 JMJD4Q9H9V9 463 aa21.46■■□□□ 1.03
SHH-205ENST00000472308 H3BRB1 525 aa21.45■■□□□ 1.02
SHH-205ENST00000472308 LGALS2P05162 132 aa21.45■■□□□ 1.02
SHH-205ENST00000472308 RB1P06400 928 aa21.45■■□□□ 1.02
SHH-205ENST00000472308 MYCLP12524 364 aaPredicted RBP21.45■■□□□ 1.02
SHH-205ENST00000472308 BMPR1AP36894 532 aa21.45■■□□□ 1.02
SHH-205ENST00000472308 MCMDC2Q4G0Z9 681 aa21.45■■□□□ 1.02
SHH-205ENST00000472308 C11orf84Q9BUA3 381 aaPredicted RBP21.45■■□□□ 1.02
SHH-205ENST00000472308 TUT1Q9H6E5 874 aaKnown RBP21.45■■□□□ 1.02
SHH-205ENST00000472308 STXBP3O00186 592 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 PTPN5P54829 565 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 TCF15Q12870 199 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 CAMK1Q14012 370 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 ASPRV1Q53RT3 343 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 KCNV1Q6PIU1 500 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 STOX1Q6ZVD7 989 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 VSIG10LQ86VR7 867 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 APBB2Q92870 758 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 CLP1Q92989 425 aaKnown RBP21.44■■□□□ 1.02
SHH-205ENST00000472308 ZFP91Q96JP5 570 aaPredicted RBP21.44■■□□□ 1.02
SHH-205ENST00000472308 ALG13Q9NP73 1137 aaKnown RBP21.44■■□□□ 1.02
SHH-205ENST00000472308 PCDHB15Q9Y5E8 787 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 ADGRA3Q8IWK6 1321 aa21.44■■□□□ 1.02
SHH-205ENST00000472308 DMDP11532 3685 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 ZDBF2Q9HCK1 2354 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 TMEM221A6NGB7 291 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 M0R296 226 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 PPP1R11O60927 126 aaPredicted RBP21.43■■□□□ 1.02
SHH-205ENST00000472308 PGM5Q15124 567 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 TRIM67Q6ZTA4 783 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 ESR2Q92731 530 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 MSLNLQ96KJ4 702 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 CD207Q9UJ71 328 aa21.43■■□□□ 1.02
SHH-205ENST00000472308 ST18O60284 1047 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 CSPG5O95196 566 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 MMP1P03956 469 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 MYH6P13533 1939 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 NMIQ13287 307 aaPredicted RBP21.42■■□□□ 1.02
SHH-205ENST00000472308 FAM26DQ5JW98 314 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 CCDC171Q6TFL3 1326 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 IGFLR1Q9H665 355 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 VAT1LQ9HCJ6 419 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 SETD4Q9NVD3 440 aa21.42■■□□□ 1.02
SHH-205ENST00000472308 ZFHX2Q9C0A1 2572 aaPredicted RBP21.42■■□□□ 1.02
SHH-205ENST00000472308 KMT2EQ8IZD2 1858 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 DHX16O60231 1041 aaKnown RBP21.41■■□□□ 1.02
SHH-205ENST00000472308 EYA4O95677 639 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 TGFB3P10600 412 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 HOXA13P31271 388 aaPredicted RBP21.41■■□□□ 1.02
SHH-205ENST00000472308 ADAM17P78536 824 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 ADAM15Q13444 863 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 PBXIP1Q96AQ6 731 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 RNF41Q9H4P4 317 aaPredicted RBP21.41■■□□□ 1.02
SHH-205ENST00000472308 KAT14Q9H8E8 782 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 MLXIPQ9HAP2 919 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 RWDD3Q9Y3V2 267 aa21.41■■□□□ 1.02
SHH-205ENST00000472308 SUPT16HQ9Y5B9 1047 aaKnown RBP21.41■■□□□ 1.02
SHH-205ENST00000472308 CACNA1HO95180 2353 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 KDM4AO75164 1064 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 TRIM50Q86XT4 487 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 ENAHQ8N8S7 591 aaPredicted RBP21.4■■□□□ 1.02
SHH-205ENST00000472308 ZNF689Q96CS4 500 aaPredicted RBP21.4■■□□□ 1.02
SHH-205ENST00000472308 AMNQ9BXJ7 453 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 CLEC1BQ9P126 229 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 TELO2Q9Y4R8 837 aa21.4■■□□□ 1.02
SHH-205ENST00000472308 LOC730098B7Z3J9 87 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 CHRNA1P02708 482 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 PARP1P09874 1014 aaKnown RBP21.39■■□□□ 1.01
SHH-205ENST00000472308 DNAJB1P25685 340 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 STAG2Q8N3U4 1231 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 LMBR1Q8WVP7 490 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 MTMR8Q96EF0 704 aa21.39■■□□□ 1.01
SHH-205ENST00000472308 LAMA4Q16363 1823 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms