RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 SAMSN1Q9NSI8 373 aaKnown RBP20.27■□□□□ 0.84
SMC4-211ENST00000469858 BTBD7Q9P203 1132 aa20.27■□□□□ 0.84
SMC4-211ENST00000469858 AGTPBP1Q9UPW5 1226 aa20.27■□□□□ 0.84
SMC4-211ENST00000469858 COBLO75128 1261 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 UNC13DQ70J99 1090 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 NELFBQ8WX92 580 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 ASCC2Q9H1I8 757 aaPredicted RBP20.26■□□□□ 0.83
SMC4-211ENST00000469858 JADE2Q9NQC1 790 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 CYP39A1Q9NYL5 469 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 RGL1Q9NZL6 768 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 LCTP09848 1927 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 ESPNB1AK53 854 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 DDX39AO00148 427 aaKnown RBP20.26■□□□□ 0.83
SMC4-211ENST00000469858 IDEP14735 1019 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 ZNF18P17022 549 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 MTMR1Q13613 665 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 ADSSL1Q8N142 457 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 MB21D1Q8N884 522 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 POLR3CQ9BUI4 534 aaPredicted RBP20.26■□□□□ 0.83
SMC4-211ENST00000469858 UNC45AQ9H3U1 944 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 RWDD2AQ9UIY3 292 aa20.26■□□□□ 0.83
SMC4-211ENST00000469858 FCER1AP12319 257 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 CDK11BP21127 795 aaKnown RBP20.25■□□□□ 0.83
SMC4-211ENST00000469858 GJA5P36382 358 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 PSMC6P62333 389 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 STIM1Q13586 685 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 TPD52L1Q16890 204 aaPredicted RBP20.25■□□□□ 0.83
SMC4-211ENST00000469858 CNNM4Q6P4Q7 775 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 ZSCAN30Q86W11 494 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 SLC10A4Q96EP9 437 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 RIT2Q99578 217 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 PAGR1Q9BTK6 254 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 DNM3Q9UQ16 869 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 KIAA1217Q5T5P2 1943 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 PVALEFA0A1B0GWK0 134 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 UBASH3AP57075 661 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 HERVK_113P62684 666 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 STK4Q13043 487 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 MOGSQ13724 837 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 FASTKD5Q7L8L6 764 aaKnown RBP20.25■□□□□ 0.83
SMC4-211ENST00000469858 GPBP1Q86WP2 473 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 CHST13Q8NET6 341 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 HPS3Q969F9 1004 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 ZNF830Q96NB3 372 aaPredicted RBP20.25■□□□□ 0.83
SMC4-211ENST00000469858 AGO4Q9HCK5 861 aaKnown RBP20.25■□□□□ 0.83
SMC4-211ENST00000469858 NRBP1Q9UHY1 535 aa20.25■□□□□ 0.83
SMC4-211ENST00000469858 TESPA1A2RU30 521 aaPredicted RBP20.24■□□□□ 0.83
SMC4-211ENST00000469858 CCND2P30279 289 aa20.24■□□□□ 0.83
SMC4-211ENST00000469858 SLC12A3P55017 1021 aa20.24■□□□□ 0.83
SMC4-211ENST00000469858 PABPC4Q13310 644 aaKnown RBP eCLIP20.24■□□□□ 0.838e-9■■■■■ 603.5
SMC4-211ENST00000469858 CTTNQ14247 550 aaKnown RBP20.24■□□□□ 0.83
SMC4-211ENST00000469858 DYDC2Q96IM9 177 aa20.24■□□□□ 0.83
SMC4-211ENST00000469858 TUFT1Q9NNX1 390 aa20.24■□□□□ 0.83
SMC4-211ENST00000469858 BMP2KQ9NSY1 1161 aaPredicted RBP20.24■□□□□ 0.83
SMC4-211ENST00000469858 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.24■□□□□ 0.83
SMC4-211ENST00000469858 PSMA7O14818 248 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 NR3C2P08235 984 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 RIOX2Q8IUF8 465 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 KIAA0895Q8NCT3 520 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 NSUN6Q8TEA1 469 aaKnown RBP20.23■□□□□ 0.83
SMC4-211ENST00000469858 DNAJC19Q96DA6 116 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 HSD17B14Q9BPX1 270 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 SPATC1LQ9H0A9 340 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 SLC39A2Q9NP94 309 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 TRIM49BA6NDI0 452 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 CBFA2T2O43439 604 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 CYP11B2P19099 503 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 PTGS1P23219 599 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 ITGB3BPQ13352 177 aaPredicted RBP20.23■□□□□ 0.83
SMC4-211ENST00000469858 SNAPC2Q13487 334 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 B3GNT9Q6UX72 402 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 CCDC186Q7Z3E2 898 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 TPH2Q8IWU9 490 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 ANKRD35Q8N283 1001 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 GTPBP4Q9BZE4 634 aaKnown RBP20.23■□□□□ 0.83
SMC4-211ENST00000469858 ZKSCAN5Q9Y2L8 839 aa20.23■□□□□ 0.83
SMC4-211ENST00000469858 SLITRK3O94933 977 aa20.22■□□□□ 0.83
SMC4-211ENST00000469858 MSNP26038 577 aaKnown RBP20.22■□□□□ 0.83
SMC4-211ENST00000469858 CCDC144BQ3MJ40 725 aa20.22■□□□□ 0.83
SMC4-211ENST00000469858 XRRA1Q6P2D8 792 aa20.22■□□□□ 0.83
SMC4-211ENST00000469858 VSIG10LQ86VR7 867 aa20.22■□□□□ 0.83
SMC4-211ENST00000469858 NCAPG2Q86XI2 1143 aa20.22■□□□□ 0.83
SMC4-211ENST00000469858 NAP1L5Q96NT1 182 aaPredicted RBP20.22■□□□□ 0.83
SMC4-211ENST00000469858 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.22■□□□□ 0.83
SMC4-211ENST00000469858 NPHP3-ACAD11A0A0J9YXS1 232 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 DHX15O43143 795 aaKnown RBP20.21■□□□□ 0.83
SMC4-211ENST00000469858 KRT18P05783 430 aaKnown RBP20.21■□□□□ 0.83
SMC4-211ENST00000469858 CACNB1Q02641 598 aaPredicted RBP20.21■□□□□ 0.83
SMC4-211ENST00000469858 RAD51AP2Q09MP3 1159 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 COASYQ13057 564 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 EPHA7Q15375 998 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 GPAT2Q6NUI2 795 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 SYT2Q8N9I0 419 aaPredicted RBP20.21■□□□□ 0.83
SMC4-211ENST00000469858 PANK4Q9NVE7 773 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 FBXO40Q9UH90 709 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 TPM3P06753 285 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 OSBPP22059 807 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 PMS1P54277 932 aaKnown RBP20.21■□□□□ 0.83
SMC4-211ENST00000469858 CDKAL1Q5VV42 579 aa20.21■□□□□ 0.83
SMC4-211ENST00000469858 MIER3Q7Z3K6 550 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms