RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TRAF7Q6Q0C0 670 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ASCL5Q7RTU5 278 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ZBTB33Q86T24 672 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ADHFE1Q8IWW8 467 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 OR6J1Q8NGC5 347 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 MORC4Q8TE76 937 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 RAD9AQ99638 391 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 MTG1Q9BT17 334 aaPredicted RBP6.31□□□□□ -1.4
PTPN4-209ENST00000469511 WDR11Q9BZH6 1224 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 BOLA2Q9H3K6 86 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ACAD9Q9H845 621 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.31□□□□□ -1.4
PTPN4-209ENST00000469511 ATP8A2Q9NTI2 1148 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 CYP39A1Q9NYL5 469 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 FBXO40Q9UH90 709 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 Q9Y3F1 56 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 CTDP1Q9Y5B0 961 aaPredicted RBP6.31□□□□□ -1.4
PTPN4-209ENST00000469511 SLC4A4Q9Y6R1 1079 aa6.31□□□□□ -1.4
PTPN4-209ENST00000469511 CACNA1GO43497 2377 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 RBM47A0AV96 593 aaKnown RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 TMEM221A6NGB7 291 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 ASB14A6NK59 587 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MINDY4BA8MYZ0 360 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 M0R296 226 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 ZBTB24O43167 697 aaPredicted RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 ANP32CO43423 234 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MBTPS2O43462 519 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 ATP9BO43861 1147 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 BAIAP3O94812 1187 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 PDGFBP01127 241 aaPredicted RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 CXCL10P02778 98 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 RLBP1P12271 317 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 CKBP12277 381 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 RPIAP49247 311 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 SH3BP2P78314 561 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 GPM6BQ13491 265 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 BAATQ14032 418 aaPredicted RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 COL19A1Q14993 1142 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 PTGISQ16647 500 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 HERC4Q5GLZ8 1057 aaPredicted RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 PLA2G2CQ5R387 149 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 SLFN13Q68D06 897 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 TTBK2Q6IQ55 1244 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 NSMFQ6X4W1 530 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 KCTD1Q719H9 257 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 LRRC8DQ7L1W4 858 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 RPAINQ86UA6 219 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 KAT2BQ92831 832 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 EDAQ92838 391 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 FOXJ1Q92949 421 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MKL1Q969V6 931 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 PBXIP1Q96AQ6 731 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 PABPC5Q96DU9 382 aaKnown RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MRPL38Q96DV4 380 aaKnown RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MFSD14AQ96MC6 490 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 INCENPQ9NQS7 918 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 CLDND1Q9NY35 253 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 TFIP11Q9UBB9 837 aaKnown RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 FEM1BQ9UK73 627 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 MAFBQ9Y5Q3 323 aaPredicted RBP6.3□□□□□ -1.4
PTPN4-209ENST00000469511 LOXHD1Q8IVV2 1947 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 GVINP1Q7Z2Y8 2422 aa6.3□□□□□ -1.4
PTPN4-209ENST00000469511 GSG1L2A8MUP6 293 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 H0Y858 1186 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 NFIBO00712 420 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 TBX10O75333 385 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 KRT37O76014 449 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 BMP3P12645 472 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 SELPP16109 830 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 MCCP23508 829 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 ALDH5A1P51649 535 aaPredicted RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 OAZ1P54368 228 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 WNT7BP56706 349 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 HYAL1Q12794 435 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 BFSP2Q13515 415 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 TTF1Q15361 905 aaPredicted RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 SMAD2Q15796 467 aaKnown RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 CTC1Q2NKJ3 1217 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 TRIM71Q2Q1W2 868 aaKnown RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 LINC01559Q495D7 138 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 C4orf48Q5BLP8 95 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 ZNF618Q5T7W0 954 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 NFRKBQ6P4R8 1299 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 CNKSR3Q6P9H4 555 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 SLC30A10Q6XR72 485 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 TRIM67Q6ZTA4 783 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 BMP8AQ7Z5Y6 402 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 PHTF2Q8N3S3 785 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 DBF4BQ8NFT6 615 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 RHPN1Q8TCX5 695 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 C1QTNF2Q9BXJ5 285 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 SEZ6LQ9BYH1 1024 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 PLXNA4Q9HCM2 1894 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 EPB41L4AQ9HCS5 686 aaPredicted RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 VTA1Q9NP79 307 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 TLR9Q9NR96 1032 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 MTMR4Q9NYA4 1195 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 HDAC6Q9UBN7 1215 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 PRR12Q9ULL5 1215 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 ISY1Q9ULR0 285 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms