RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 BCAS3Q9H6U6 928 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 AGO4Q9HCK5 861 aaKnown RBP13.58□□□□□ -0.24
VPS13D-204ENST00000469054 LRRC37A2A6NM11 1700 aa13.58□□□□□ -0.24
VPS13D-204ENST00000469054 FAM205CA6NFA0 338 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 SORBS3O60504 671 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 TDP2O95551 362 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 MMP3P08254 477 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 ACLYP53396 1101 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 GNL2Q13823 731 aaKnown RBP13.57□□□□□ -0.24
VPS13D-204ENST00000469054 HSDL1Q3SXM5 330 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 Q4G0T1 1027 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 FERMT2Q96AC1 680 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 MBOAT7Q96N66 472 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 PKD2L1Q9P0L9 805 aa13.57□□□□□ -0.24
VPS13D-204ENST00000469054 A0A1W2PQ45 241 aaPredicted RBP13.56□□□□□ -0.24
VPS13D-204ENST00000469054 A0A1W2PQY0 241 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 KIF28PB7ZC32 967 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 IPO5O00410 1097 aaKnown RBP13.56□□□□□ -0.24
VPS13D-204ENST00000469054 KPNA6O60684 536 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 CABYRO75952 493 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 MYL3P08590 195 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 PDCP20941 246 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 U2AF2P26368 475 aaKnown RBP eCLIP13.56□□□□□ -0.241e-7■■■■□ 24
VPS13D-204ENST00000469054 ITGB3BPQ13352 177 aaPredicted RBP13.56□□□□□ -0.24
VPS13D-204ENST00000469054 DGKDQ16760 1214 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 PPP4R3AQ6IN85 833 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 CXCL17Q6UXB2 119 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 GLT1D1Q96MS3 346 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 NAP1L4Q99733 375 aaKnown RBP13.56□□□□□ -0.24
VPS13D-204ENST00000469054 SDF4Q9BRK5 362 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 ZNF577Q9BSK1 485 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 STARD7Q9NQZ5 370 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 POLR3EQ9NVU0 708 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 DDX25Q9UHL0 483 aaKnown RBP13.56□□□□□ -0.24
VPS13D-204ENST00000469054 NFASCO94856 1347 aa13.56□□□□□ -0.24
VPS13D-204ENST00000469054 NOP56O00567 594 aaKnown RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 MSH4O15457 936 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 CCNT1O60563 726 aaKnown RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 PPFIA4O75335 1185 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 HSP90AA1P07900 732 aaKnown RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 HOXD8P13378 290 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 GCFC2P16383 781 aaKnown RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 PURAQ00577 322 aaKnown RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 MCTP1Q6DN14 999 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 NOSTRINQ8IVI9 506 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 VTI1AQ96AJ9 217 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 GPR20Q99678 358 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 MTG1Q9BT17 334 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 JPH1Q9HDC5 661 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-204ENST00000469054 TBC1D22BQ9NU19 505 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 ELP1O95163 1332 aa13.55□□□□□ -0.24
VPS13D-204ENST00000469054 DHX15O43143 795 aaKnown RBP13.54□□□□□ -0.24
VPS13D-204ENST00000469054 SLC37A4O43826 429 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 TRAPPC10P48553 1259 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 ATN1P54259 1190 aaPredicted RBP13.54□□□□□ -0.24
VPS13D-204ENST00000469054 SP4Q02446 784 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 SLC39A5Q6ZMH5 540 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 SEPT1Q8WYJ6 367 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 UIMC1Q96RL1 719 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 HTATIP2Q9BUP3 242 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 SLC9A2Q9UBY0 812 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 TELO2Q9Y4R8 837 aa13.54□□□□□ -0.24
VPS13D-204ENST00000469054 DDX39AO00148 427 aaKnown RBP13.53□□□□□ -0.24
VPS13D-204ENST00000469054 WNT7AO00755 349 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 ATP2B1P20020 1258 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 SYT1P21579 422 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 BECN1Q14457 450 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 C1orf53Q5VUE5 145 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 ETNPPLQ8TBG4 499 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 SLC5A5Q92911 643 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 RIT2Q99578 217 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 KCNMB3Q9NPA1 279 aa13.53□□□□□ -0.24
VPS13D-204ENST00000469054 NOL7Q9UMY1 257 aaKnown RBP13.53□□□□□ -0.24
VPS13D-204ENST00000469054 A0A0U1RQG5 324 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-204ENST00000469054 GSTTP1A0A1W2PQM5 241 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 VPS37CA5D8V6 355 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-204ENST00000469054 TBX3O15119 743 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 CCNE2O96020 404 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 ACTR2P61160 394 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 ITGA7Q13683 1181 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 SNX17Q15036 470 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 LRRC26Q2I0M4 334 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 SPRYD3Q8NCJ5 442 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 KAT2BQ92831 832 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 GJA10Q969M2 543 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 FAM20AQ96MK3 541 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 C16orf70Q9BSU1 422 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 SEZ6LQ9BYH1 1024 aa13.52□□□□□ -0.25
VPS13D-204ENST00000469054 KIAA1217Q5T5P2 1943 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 GRIN2DO15399 1336 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 ARVCFO00192 962 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 STX6O43752 255 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 GAS7O60861 476 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 PSMD10O75832 226 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 ATG7O95352 703 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 F2P00734 622 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 LGALS2P05162 132 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 ZNF286BP0CG31 522 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 MCM7P33993 719 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 TCF7P36402 384 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms