RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SKAP1Q86WV1 359 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 CMTR1Q8N1G2 835 aaKnown RBP19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 FANCBQ8NB91 859 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 PPM1EQ8WY54 764 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 WNT8BQ93098 351 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 TUT1Q9H6E5 874 aaKnown RBP19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 RAPGEFL1Q9UHV5 662 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 HOXC8P31273 242 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 WDR5P61964 334 aaKnown RBP19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 ZNF618Q5T7W0 954 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 TRAF7Q6Q0C0 670 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 TMTC3Q6ZXV5 915 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 SERINC5Q86VE9 423 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 RAB11FIP4Q86YS3 637 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 GPR20Q99678 358 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 SENP7Q9BQF6 1050 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 USP26Q9BXU7 913 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 PSTPIP2Q9H939 334 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 BDP1A6H8Y1 2624 aa19.07■□□□□ 0.64
CCDC28B-204ENST00000469003 C17orf102A2RUQ5 167 aa19.06■□□□□ 0.64
CCDC28B-204ENST00000469003 NLRX1Q86UT6 975 aa19.06■□□□□ 0.64
CCDC28B-204ENST00000469003 MICU3Q86XE3 530 aa19.06■□□□□ 0.64
CCDC28B-204ENST00000469003 NEK1Q96PY6 1258 aa19.06■□□□□ 0.64
CCDC28B-204ENST00000469003 ABHD14A-ACY1A0A1B0GW23 586 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 EFCAB14O75071 495 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 SMIM10L2AP0DMW4 78 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 SMIM10L2BP0DMW5 78 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 TAP1Q03518 808 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 MBTPS1Q14703 1052 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 SYNE3Q6ZMZ3 975 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 CCDC82Q8N4S0 544 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 GIMAP8Q8ND71 665 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 ATP6V0A1Q93050 837 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 GPRASP2Q96D09 838 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 CHD7Q9P2D1 2997 aa19.05■□□□□ 0.64
CCDC28B-204ENST00000469003 EMSYQ7Z589 1322 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 hCG_1642624A0A1W2PR95 340 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 TLL1O43897 1013 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 THPOP40225 353 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 DEFB103AP81534 67 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 EXOSC10Q01780 885 aaKnown RBP19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 CCDC85BQ15834 202 aaPredicted RBP19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 TCTN1Q2MV58 587 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 TSGA10IPQ3SY00 556 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 APOA5Q6Q788 366 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 ATXN2LQ8WWM7 1075 aaKnown RBP19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 CDHR1Q96JP9 859 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 RNPEPQ9H4A4 650 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 RBM28Q9NW13 759 aaKnown RBP19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 THEGQ9P2T0 379 aa19.04■□□□□ 0.64
CCDC28B-204ENST00000469003 RSPH10B2B2RC85 870 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 CDC45O75419 566 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 LGR5O75473 907 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 ARHGEF15O94989 841 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 RSPH10BP0C881 870 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 POU3F3P20264 500 aaPredicted RBP19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 IKBKEQ14164 716 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 UBE2SQ16763 222 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 DHX32Q7L7V1 743 aaKnown RBP19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 HEATR3Q7Z4Q2 680 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 IL27Q8NEV9 243 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 CERS4Q9HA82 394 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 ZNF215Q9UL58 517 aaPredicted RBP19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 TELO2Q9Y4R8 837 aa19.03■□□□□ 0.64
CCDC28B-204ENST00000469003 CNTNAP5Q8WYK1 1306 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 SPDYE3A6NKU9 549 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 RFXAPO00287 272 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 TREHO43280 583 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 CAND2O75155 1236 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 GNAT1P11488 350 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 KCNA2P16389 499 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 UTP14CQ5TAP6 766 aaKnown RBP19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 TRIM50Q86XT4 487 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 RASEFQ8IZ41 740 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 ADAMTS19Q8TE59 1207 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 FAM122AQ96E09 287 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 ASB2Q96Q27 587 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 ZBED2Q9BTP6 218 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 PCDHA6Q9UN73 950 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 PCDHA8Q9Y5H6 950 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 UBIAD1Q9Y5Z9 338 aa19.02■□□□□ 0.64
CCDC28B-204ENST00000469003 EPOPA6NHQ4 379 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 GTPBP6O43824 516 aaPredicted RBP19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 ATP9AO75110 1047 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 GJB5O95377 273 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 ITGB5P18084 799 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 PLA2G5P39877 138 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 SP4Q02446 784 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 KRT32Q14532 448 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 ADCK5Q3MIX3 580 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 TMCO2Q7Z6W1 182 aaPredicted RBP19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 ARNTL2Q8WYA1 636 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 TCEANC2Q96MN5 208 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 EHMT1Q9H9B1 1298 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 SETD4Q9NVD3 440 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 MTCH2Q9Y6C9 303 aa19.01■□□□□ 0.63
CCDC28B-204ENST00000469003 MICAL3Q7RTP6 2002 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 MAFGO15525 162 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 ZBTB43O43298 467 aa19■□□□□ 0.63
CCDC28B-204ENST00000469003 MRPS5P82675 430 aaKnown RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms