RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 H3BRB1 525 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 SELPP16109 830 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 PSMA5P28066 241 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 NAPAP54920 295 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 SEMA3FQ13275 785 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 UBE2SQ16763 222 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 WWC2Q6AWC2 1192 aa21.89■■□□□ 1.09
COL7A1-207ENST00000467985 FTOQ9C0B1 505 aaKnown RBP eCLIP21.89■■□□□ 1.09
COL7A1-207ENST00000467985 TUT1Q9H6E5 874 aaKnown RBP21.89■■□□□ 1.09
COL7A1-207ENST00000467985 V9GY48 417 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-207ENST00000467985 MAFGO15525 162 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 LGALS2P05162 132 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 Q6ZUG5 572 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 FBXL16Q8N461 479 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 MYLIPQ8WY64 445 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 GPR20Q99678 358 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 RIC8AQ9NPQ8 531 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 NAP1L2Q9ULW6 460 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-207ENST00000467985 PCDHA6Q9UN73 950 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 PCDHA8Q9Y5H6 950 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 SCN5AQ14524 2016 aa21.88■■□□□ 1.09
COL7A1-207ENST00000467985 CUL9Q8IWT3 2517 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 FOSP01100 380 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 FOSL2P15408 326 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 ATP2A2P16615 1042 aaKnown RBP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 PBX2P40425 430 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 METAP2P50579 478 aaKnown RBP eCLIP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 LRRC8DQ7L1W4 858 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 DHX38Q92620 1227 aaKnown RBP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 BCAS3Q9H6U6 928 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 BARHL2Q9NY43 387 aa21.87■■□□□ 1.09
COL7A1-207ENST00000467985 ZNF215Q9UL58 517 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 TRIP12Q14669 1992 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-207ENST00000467985 BAIAP3O94812 1187 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 CKBP12277 381 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 ITGB5P18084 799 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 ADCY7P51828 1080 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 MTMR1Q13613 665 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 GRIN2CQ14957 1233 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 BRF1Q92994 677 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 SLC28A3Q9HAS3 691 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 FAM217BQ9NTX9 383 aaPredicted RBP21.86■■□□□ 1.09
COL7A1-207ENST00000467985 PCDHA11Q9Y5I1 949 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 UBIAD1Q9Y5Z9 338 aa21.86■■□□□ 1.09
COL7A1-207ENST00000467985 C17orf102A2RUQ5 167 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 GNAT1P11488 350 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 CPA1P15085 419 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 RPS6KB1P23443 525 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 CDC27P30260 824 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 APOBRQ0VD83 1088 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 SERINC5Q86VE9 423 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 MAFAQ8NHW3 353 aaPredicted RBP21.85■■□□□ 1.09
COL7A1-207ENST00000467985 PHOSPHO2Q8TCD6 241 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 SLC9A7Q96T83 725 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 NID2Q14112 1375 aa21.85■■□□□ 1.09
COL7A1-207ENST00000467985 DOCK5Q9H7D0 1870 aa21.84■■□□□ 1.09
COL7A1-207ENST00000467985 STXBP3O00186 592 aa21.84■■□□□ 1.09
COL7A1-207ENST00000467985 HOXC8P31273 242 aa21.84■■□□□ 1.09
COL7A1-207ENST00000467985 JADE2Q9NQC1 790 aa21.84■■□□□ 1.09
COL7A1-207ENST00000467985 SMCO2A6NFE2 343 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 CXCL10P02778 98 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 SMIM10L2AP0DMW4 78 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 SMIM10L2BP0DMW5 78 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 KCNA2P16389 499 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 ADD1P35611 737 aaKnown RBP21.83■■□□□ 1.09
COL7A1-207ENST00000467985 AP3B2Q13367 1082 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 PFKFB3Q16875 520 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-207ENST00000467985 TRIM71Q2Q1W2 868 aaKnown RBP21.83■■□□□ 1.09
COL7A1-207ENST00000467985 TYW1BQ6NUM6 668 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 ATP6V0A1Q93050 837 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 AGXT2Q9BYV1 514 aa21.83■■□□□ 1.09
COL7A1-207ENST00000467985 GBF1Q92538 1859 aa21.83■■□□□ 1.08
COL7A1-207ENST00000467985 EMSYQ7Z589 1322 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 ATP9AO75110 1047 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 KCNJ6P48051 423 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 ZNF200P98182 395 aaPredicted RBP21.82■■□□□ 1.08
COL7A1-207ENST00000467985 SP4Q02446 784 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 UTP14CQ5TAP6 766 aaKnown RBP21.82■■□□□ 1.08
COL7A1-207ENST00000467985 MCTP2Q6DN12 878 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 CNKSR3Q6P9H4 555 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 CCDC12Q8WUD4 166 aaPredicted RBP21.82■■□□□ 1.08
COL7A1-207ENST00000467985 NKX2-4Q9H2Z4 354 aa21.82■■□□□ 1.08
COL7A1-207ENST00000467985 YBX2Q9Y2T7 364 aaKnown RBP21.82■■□□□ 1.08
COL7A1-207ENST00000467985 EFCAB14O75071 495 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 CAND2O75155 1236 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 SCG2P13521 617 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 TCF7P36402 384 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-207ENST00000467985 RABGGTBP53611 331 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 HIC1Q14526 733 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 ZNF618Q5T7W0 954 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 TET1Q8NFU7 2136 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 SEPT1Q8WYJ6 367 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 GAS2L1Q99501 681 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-207ENST00000467985 MXRA8Q9BRK3 442 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 ANO3Q9BYT9 981 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 RNPEPQ9H4A4 650 aa21.81■■□□□ 1.08
COL7A1-207ENST00000467985 KIF28PB7ZC32 967 aa21.8■■□□□ 1.08
COL7A1-207ENST00000467985 PRPF3O43395 683 aaKnown RBP21.8■■□□□ 1.08
COL7A1-207ENST00000467985 NBNO60934 754 aa21.8■■□□□ 1.08
COL7A1-207ENST00000467985 THPOP40225 353 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms