RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 RALGAPA2Q2PPJ7 1873 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 CCDC69A6NI79 296 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 CXCL10P02778 98 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 PARP1P09874 1014 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 LTBRP36941 435 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 TROAPQ12815 778 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 PTGISQ16647 500 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 TCEAL5Q5H9L2 206 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 FAM117BQ6P1L5 589 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 NFXL1Q6ZNB6 911 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 RUFY3Q7L099 469 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 SGMS1Q86VZ5 419 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 ZNF654Q8IZM8 581 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 SAMD11Q96NU1 681 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 MAF1Q9H063 256 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 ZSWIM6Q9HCJ5 1215 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 FAM86C1Q9NVL1 165 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 CLDND1Q9NY35 253 aa13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 ADD3Q9UEY8 706 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-206ENST00000466342 DCHS1Q96JQ0 3298 aa13.77□□□□□ -0.2
SQSTM1-206ENST00000466342 RBM47A0AV96 593 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 H3BNC9 293 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 NCK2O43639 380 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 DDAH1O94760 285 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 GOLGA8HP0CJ92 632 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 SELPP16109 830 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 GPM6BQ13491 265 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 BAATQ14032 418 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 GRM4Q14833 912 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 TCTN1Q2MV58 587 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 EPC2Q52LR7 807 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 LRRC8DQ7L1W4 858 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 FBXL16Q8N461 479 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 FBXL6Q8N531 539 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 OR6J1Q8NGC5 347 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 MAP3K14Q99558 947 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 AGXT2Q9BYV1 514 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 NSUN3Q9H649 340 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 ALG13Q9NP73 1137 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 CYP46A1Q9Y6A2 500 aa13.77□□□□□ -0.21
SQSTM1-206ENST00000466342 PALM3A6NDB9 673 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 A6NJR5 290 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 NFIBO00712 420 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 MBTPS2O43462 519 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 NBNO60934 754 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 CALM1P0DP23 149 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 CALM2P0DP24 149 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 CALM3P0DP25 149 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 HTRA4P83105 476 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 FGD1P98174 961 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 APOA5Q6Q788 366 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 Q6ZUG5 572 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 RGS22Q8NE09 1264 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 CLEC4DQ8WXI8 215 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 ATOH1Q92858 354 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 MYL10Q9BUA6 226 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 UBA5Q9GZZ9 404 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 MAD2L2Q9UI95 211 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 SLC12A7Q9Y666 1083 aa13.76□□□□□ -0.21
SQSTM1-206ENST00000466342 MYO15AQ9UKN7 3530 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 PTPDC1A2A3K4 754 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 NKRFO15226 690 aaKnown RBP eCLIP13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 RBL2Q08999 1139 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 CTC1Q2NKJ3 1217 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 SYNE3Q6ZMZ3 975 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 RNF207Q6ZRF8 634 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 RPAINQ86UA6 219 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 STAG2Q8N3U4 1231 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 CTCFLQ8NI51 663 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 SP7Q8TDD2 431 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 PURBQ96QR8 312 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 CTAGE1Q96RT6 745 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 CPVLQ9H3G5 476 aa13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 BAZ2BQ9UIF8 2168 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-206ENST00000466342 B4DLN1 442 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 KLRF2D3W0D1 207 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 PROB1E7EW31 1015 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 STXBP3O00186 592 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 CKBP12277 381 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 KIF5BP33176 963 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 RBM25P49756 843 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 ALDH5A1P51649 535 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 MRPL12P52815 198 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 RPS6P62753 249 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 ZXDAP98168 799 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 GDF6Q6KF10 455 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.74□□□□□ -0.216e-7■■■■■ 41.2
SQSTM1-206ENST00000466342 SESTD1Q86VW0 696 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 ADGRF4Q8IZF3 695 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 DNERQ8NFT8 737 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 BRF1Q92994 677 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 MPHOSPH6Q99547 160 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 C22orf23Q9BZE7 217 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 UPF2Q9HAU5 1272 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 BRPF3Q9ULD4 1205 aa13.74□□□□□ -0.21
SQSTM1-206ENST00000466342 ABCB11O95342 1321 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 KLF18A0A0U1RQI7 1052 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 ZBTB43O43298 467 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 RXRAP19793 462 aa13.73□□□□□ -0.21
SQSTM1-206ENST00000466342 CALML3P27482 149 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms