RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 IQCF3P0C7M6 154 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 SCG2P13521 617 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 ATP2A2P16615 1042 aaKnown RBP20.31■□□□□ 0.84
COL7A1-205ENST00000465238 CHMP4BP1P59074 171 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 PTGISQ16647 500 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 DGKDQ16760 1214 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 PFKFB3Q16875 520 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-205ENST00000465238 WWC2Q6AWC2 1192 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 CCDC155Q8N6L0 562 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 NECAB1Q8N987 351 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 USP38Q8NB14 1042 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 CUL5Q93034 780 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 ZSCAN31Q96LW9 406 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-205ENST00000465238 MRVI1Q9Y6F6 885 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 TRIP12Q14669 1992 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-205ENST00000465238 MYH7BA7E2Y1 1941 aa20.31■□□□□ 0.84
COL7A1-205ENST00000465238 HOXA13P31271 388 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-205ENST00000465238 NAPAP54920 295 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 LAMC2Q13753 1193 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 KCNV1Q6PIU1 500 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 SMARCC2Q8TAQ2 1214 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 CAGE1Q8TC20 777 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 KAT2BQ92831 832 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 PDCD2LQ9BRP1 358 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 PSTPIP2Q9H939 334 aa20.3■□□□□ 0.84
COL7A1-205ENST00000465238 LARGE1O95461 756 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 RABGGTBP53611 331 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 PPP2R2DQ66LE6 453 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 PPP1R18Q6NYC8 613 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 PPTC7Q8NI37 304 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 AFAP1L1Q8TED9 768 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 SYMPKQ92797 1274 aaKnown RBP20.29■□□□□ 0.84
COL7A1-205ENST00000465238 GTF3C6Q969F1 213 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 KATNAL1Q9BW62 490 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 BARHL2Q9NY43 387 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 SPTBN5Q9NRC6 3674 aaKnown RBP20.29■□□□□ 0.84
COL7A1-205ENST00000465238 TRANK1O15050 2925 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 TET1Q8NFU7 2136 aa20.29■□□□□ 0.84
COL7A1-205ENST00000465238 STXBP3O00186 592 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 MYCLP12524 364 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-205ENST00000465238 ADGRE1Q14246 886 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 PKN1Q16512 942 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 GDF6Q6KF10 455 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-205ENST00000465238 VSIG10LQ86VR7 867 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 FCHSD1Q86WN1 690 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 DHX37Q8IY37 1157 aaKnown RBP20.28■□□□□ 0.84
COL7A1-205ENST00000465238 PHOSPHO2Q8TCD6 241 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 CCDC12Q8WUD4 166 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-205ENST00000465238 SLC9A7Q96T83 725 aa20.28■□□□□ 0.84
COL7A1-205ENST00000465238 FTOQ9C0B1 505 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL7A1-205ENST00000465238 RGS20O76081 388 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 DEXIO95424 95 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 PGM5Q15124 567 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 C7orf31Q8N865 590 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 CTAGE1Q96RT6 745 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 GLT8D2Q9H1C3 349 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 SH2B1Q9NRF2 756 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-205ENST00000465238 GTF2IRD1Q9UHL9 959 aa20.27■□□□□ 0.84
COL7A1-205ENST00000465238 SMCO2A6NFE2 343 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 PIK3CDO00329 1044 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 PPFIA4O75335 1185 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 BAIAP3O94812 1187 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 PARNO95453 639 aaKnown RBP20.26■□□□□ 0.83
COL7A1-205ENST00000465238 F2P00734 622 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 TGFB3P10600 412 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 MYOGP15173 224 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 IGFBP4P22692 258 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 MCM2P49736 904 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 PSEN2P49810 448 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 ADCY7P51828 1080 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 RBL2Q08999 1139 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 MYSM1Q5VVJ2 828 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 USP17L6PQ6QN14 398 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 PPM1EQ8WY54 764 aa20.26■□□□□ 0.83
COL7A1-205ENST00000465238 HAS3O00219 553 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 MEIS2O14770 477 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 HOXD8P13378 290 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-205ENST00000465238 SELPP16109 830 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 CCND2P30279 289 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 MFSD10Q14728 455 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 TJAP1Q5JTD0 557 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 CELF3Q5SZQ8 465 aaKnown RBP20.25■□□□□ 0.83
COL7A1-205ENST00000465238 TYW1BQ6NUM6 668 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 TEX2Q8IWB9 1127 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 CCDC148Q8NFR7 591 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 C6orf50Q9HD87 102 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 RIC8AQ9NPQ8 531 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 HDAC6Q9UBN7 1215 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 STK36Q9NRP7 1315 aa20.25■□□□□ 0.83
COL7A1-205ENST00000465238 CTDNEP1O95476 244 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 GGPS1O95749 300 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 ZNF286BP0CG31 522 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 KIAA0753Q2KHM9 967 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 LRRC8DQ7L1W4 858 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 CCDC83Q8IWF9 413 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 IL31RAQ8NI17 732 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 WASF1Q92558 559 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 SPATA33Q96N06 139 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 ALG1Q9BT22 464 aa20.24■□□□□ 0.83
COL7A1-205ENST00000465238 SH3GLB2Q9NR46 395 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms