RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 RETREG2Q8NC44 543 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 CCDC148Q8NFR7 591 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 PGBD1Q96JS3 809 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.56■□□□□ 0.56
COL1A1-202ENST00000463440 LARP6Q9BRS8 491 aaKnown RBP18.56■□□□□ 0.56
COL1A1-202ENST00000463440 ZMYND12Q9H0C1 365 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 WNT8AQ9H1J5 351 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 TMEM260Q9NX78 707 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 HDAC6Q9UBN7 1215 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 GTF2IRD1Q9UHL9 959 aa18.56■□□□□ 0.56
COL1A1-202ENST00000463440 PITPNM1O00562 1244 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 LGALS2P05162 132 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 ACRP10323 421 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 SSRP1Q08945 709 aaKnown RBP18.55■□□□□ 0.56
COL1A1-202ENST00000463440 C16orf59Q7L2K0 433 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 RPUSD2Q8IZ73 545 aaKnown RBP18.55■□□□□ 0.56
COL1A1-202ENST00000463440 GPR20Q99678 358 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 MXRA8Q9BRK3 442 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 C16orf70Q9BSU1 422 aa18.55■□□□□ 0.56
COL1A1-202ENST00000463440 H3BRB1 525 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 ATP9AO75110 1047 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 PPFIA3O75145 1194 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 KCNA2P16389 499 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 SREBF1P36956 1147 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 SP4Q02446 784 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 STK3Q13188 491 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 ANKRD1Q15327 319 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 JAKMIP3Q5VZ66 844 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 ZNF365Q70YC5 407 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 REXO1Q8N1G1 1221 aaKnown RBP18.54■□□□□ 0.56
COL1A1-202ENST00000463440 BICD2Q8TD16 824 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 SCLYQ96I15 445 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 MTIF3Q9H2K0 278 aaKnown RBP18.54■□□□□ 0.56
COL1A1-202ENST00000463440 TUT1Q9H6E5 874 aaKnown RBP18.54■□□□□ 0.56
COL1A1-202ENST00000463440 ZNF215Q9UL58 517 aaPredicted RBP18.54■□□□□ 0.56
COL1A1-202ENST00000463440 LAMA3Q16787 3333 aa18.54■□□□□ 0.56
COL1A1-202ENST00000463440 FGBP02675 491 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 ZNF76P36508 570 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 SMAD3P84022 425 aaKnown RBP18.53■□□□□ 0.56
COL1A1-202ENST00000463440 ARHGAP4P98171 946 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 CEP55Q53EZ4 464 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 DEFB123Q8N688 67 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 CAGE1Q8TC20 777 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 DOCK5Q9H7D0 1870 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 SH3GLB2Q9NR46 395 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 KCNH7Q9NS40 1196 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 PKD2L1Q9P0L9 805 aa18.53■□□□□ 0.56
COL1A1-202ENST00000463440 CDKL5O76039 1030 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 DEXIO95424 95 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 PFKMP08237 780 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 RFC2P35250 354 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 UTP14CQ5TAP6 766 aaKnown RBP18.52■□□□□ 0.56
COL1A1-202ENST00000463440 SEPT1Q8WYJ6 367 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 IL17RAQ96F46 866 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 SLKQ9H2G2 1235 aaPredicted RBP18.52■□□□□ 0.56
COL1A1-202ENST00000463440 VPS54Q9P1Q0 977 aa18.52■□□□□ 0.56
COL1A1-202ENST00000463440 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.51■□□□□ 0.55
COL1A1-202ENST00000463440 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.51■□□□□ 0.55
COL1A1-202ENST00000463440 IQCF3P0C7M6 154 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 TCF7P36402 384 aaPredicted RBP18.51■□□□□ 0.55
COL1A1-202ENST00000463440 PTK7Q13308 1070 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 FAM109BQ6ICB4 259 aaPredicted RBP18.51■□□□□ 0.55
COL1A1-202ENST00000463440 NIPA1Q7RTP0 329 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 CYP2W1Q8TAV3 490 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 AFAP1L1Q8TED9 768 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 HERVK_113Q902F9 699 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 CTAGE1Q96RT6 745 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 SDF4Q9BRK5 362 aa18.51■□□□□ 0.55
COL1A1-202ENST00000463440 C17orf102A2RUQ5 167 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 MEIS1O00470 390 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 CYP3A4P08684 503 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 SMIM10L2AP0DMW4 78 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 SMIM10L2BP0DMW5 78 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 AK2P54819 239 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 NLRP5P59047 1200 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 RASIP1Q5U651 963 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 Q7L0L9 218 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 TRIM50Q86XT4 487 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 JPH1Q9HDC5 661 aaPredicted RBP18.5■□□□□ 0.55
COL1A1-202ENST00000463440 SLC9A2Q9UBY0 812 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 TPCN1Q9ULQ1 816 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 TELO2Q9Y4R8 837 aa18.5■□□□□ 0.55
COL1A1-202ENST00000463440 NFASCO94856 1347 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 GSTTP1A0A1W2PQM5 241 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 PFKFB2O60825 505 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 PARNO95453 639 aaKnown RBP18.49■□□□□ 0.55
COL1A1-202ENST00000463440 SEC24BO95487 1268 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 ARP10275 920 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 GNAT1P11488 350 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 SELPP16109 830 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 ZNF200P98182 395 aaPredicted RBP18.49■□□□□ 0.55
COL1A1-202ENST00000463440 RBL2Q08999 1139 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 SCRN1Q12765 414 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 ZNF697Q5TEC3 545 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 OTOP2Q7RTS6 562 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 DEFB128Q7Z7B8 93 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 FAM177A1Q8N128 213 aaPredicted RBP18.49■□□□□ 0.55
COL1A1-202ENST00000463440 DHX38Q92620 1227 aaKnown RBP18.49■□□□□ 0.55
COL1A1-202ENST00000463440 ATP6V0A1Q93050 837 aa18.49■□□□□ 0.55
COL1A1-202ENST00000463440 AGO4Q9HCK5 861 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms