RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SCN10AQ9Y5Y9 1956 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 A0A0U1RQG5 324 aaPredicted RBP25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 ATP9AO75110 1047 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 ARP10275 920 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 NR5A1Q13285 461 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 INF2Q27J81 1249 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 PRR16Q569H4 304 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 PIK3AP1Q6ZUJ8 805 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 SDF4Q9BRK5 362 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 SMC3Q9UQE7 1217 aa25.97■■□□□ 1.75
CCDC28B-203ENST00000461819 IGLV3-22A0A075B6J6 115 aa25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 CIITAP33076 1130 aa25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 PSMC6P62333 389 aa25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 SNX17Q15036 470 aa25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 TRIM60Q495X7 471 aa25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 AGO4Q9HCK5 861 aaKnown RBP25.96■■□□□ 1.75
CCDC28B-203ENST00000461819 GJB2P29033 226 aa25.95■■□□□ 1.74
CCDC28B-203ENST00000461819 CHMP4BP1P59074 171 aa25.95■■□□□ 1.74
CCDC28B-203ENST00000461819 C1orf53Q5VUE5 145 aa25.95■■□□□ 1.74
CCDC28B-203ENST00000461819 NR2E3Q9Y5X4 410 aa25.95■■□□□ 1.74
CCDC28B-203ENST00000461819 BTBD18B2RXH4 712 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 K7ELQ4 463 aaPredicted RBP25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 ZNF286BP0CG31 522 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 ITGA7Q13683 1181 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 GNL2Q13823 731 aaKnown RBP25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 LETM2Q2VYF4 491 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 NEK8Q86SG6 692 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 FBXO18Q8NFZ0 1043 aa25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 JPH1Q9HDC5 661 aaPredicted RBP25.94■■□□□ 1.74
CCDC28B-203ENST00000461819 NFASCO94856 1347 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 MROH7Q68CQ1 1323 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 ARVCFO00192 962 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 PQBP1O60828 265 aaKnown RBP25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 PPFIA4O75335 1185 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 CUL4AQ13619 759 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 TNFRSF25Q93038 417 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 UIMC1Q96RL1 719 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 GPR20Q99678 358 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 ZNF577Q9BSK1 485 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 SLC9A2Q9UBY0 812 aa25.93■■□□□ 1.74
CCDC28B-203ENST00000461819 FAM205CA6NFA0 338 aa25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 IPO5O00410 1097 aaKnown RBP25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 TDP2O95551 362 aa25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 HOXD8P13378 290 aaPredicted RBP25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 ITGB3BPQ13352 177 aaPredicted RBP25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 EARS2Q5JPH6 523 aaKnown RBP25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 HSCBQ8IWL3 235 aa25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 KATNAL1Q9BW62 490 aa25.92■■□□□ 1.74
CCDC28B-203ENST00000461819 DDX39AO00148 427 aaKnown RBP25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 EDIL3O43854 480 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 TLE2Q04725 743 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 FAM47CQ5HY64 1035 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 MOXD1Q6UVY6 613 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 SNX21Q969T3 373 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 LENG9Q96B70 501 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 NAP1L4Q99733 375 aaKnown RBP25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 SEZ6LQ9BYH1 1024 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 DDX25Q9UHL0 483 aaKnown RBP25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 TCEAL9Q9UHQ7 104 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 TELO2Q9Y4R8 837 aa25.91■■□□□ 1.74
CCDC28B-203ENST00000461819 CYP3A7-CYP3A51PA0A087WV96 503 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 DCDC2CA8MYV0 355 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 LGALS2P05162 132 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 CYP3A7P24462 503 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 NBPF20Q3BBV1 942 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 Q4G0T1 1027 aa25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 UTP14CQ5TAP6 766 aaKnown RBP25.9■■□□□ 1.74
CCDC28B-203ENST00000461819 GRIN2DO15399 1336 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 H3BQV1 296 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 TLR3O15455 904 aaKnown RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 CCNT1O60563 726 aaKnown RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 F2P00734 622 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 GCFC2P16383 781 aaKnown RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 TCF7P36402 384 aaPredicted RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 PSEN2P49810 448 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 CDK7P50613 346 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 MFSD10Q14728 455 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 ANKRD33Q7Z3H0 272 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 SEPT1Q8WYJ6 367 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 KAT2BQ92831 832 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 FOXP1Q9H334 677 aaPredicted RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 PRDM5Q9NQX1 630 aaPredicted RBP25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 TBC1D22BQ9NU19 505 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 PRKAG2Q9UGJ0 569 aa25.89■■□□□ 1.74
CCDC28B-203ENST00000461819 MSH4O15457 936 aa25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 SLC43A3Q8NBI5 491 aa25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 PPP1R13LQ8WUF5 828 aa25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 TOX2Q96NM4 488 aa25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 ZNF215Q9UL58 517 aaPredicted RBP25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 ZMYND8Q9ULU4 1186 aaPredicted RBP25.88■■□□□ 1.73
CCDC28B-203ENST00000461819 CLTBP09497 229 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 ACTR2P61160 394 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 KIAA0753Q2KHM9 967 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 PPP4R3AQ6IN85 833 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 NFRKBQ6P4R8 1299 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 TRIM50Q86XT4 487 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 MBOAT7Q96N66 472 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 C16orf70Q9BSU1 422 aa25.87■■□□□ 1.73
CCDC28B-203ENST00000461819 WDR81Q562E7 1941 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 GSTTP1A0A1W2PQM5 241 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms