RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 DUOX1Q9NRD9 1551 aa17■□□□□ 0.31
LMNB1-203ENST00000460265 HNRNPH1P31943 449 aaKnown RBP17■□□□□ 0.31
LMNB1-203ENST00000460265 RDXP35241 583 aaKnown RBP17■□□□□ 0.31
LMNB1-203ENST00000460265 RDH13Q8NBN7 331 aa17■□□□□ 0.31
LMNB1-203ENST00000460265 DAGLBQ8NCG7 672 aa17■□□□□ 0.31
LMNB1-203ENST00000460265 NHEJ1Q9H9Q4 299 aaPredicted RBP17■□□□□ 0.31
LMNB1-203ENST00000460265 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17■□□□□ 0.311e-6■■■■■ 42.6
LMNB1-203ENST00000460265 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17■□□□□ 0.31
LMNB1-203ENST00000460265 PLA2G4BP0C869 781 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 BMP3P12645 472 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 EN1Q05925 392 aaPredicted RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 KCNB1Q14721 858 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 TBC1D10BQ4KMP7 808 aaPredicted RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 PIGOQ8TEQ8 1089 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 PRMT6Q96LA8 375 aaPredicted RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 PCDHB13Q9Y5F0 798 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 AHDC1Q5TGY3 1603 aaPredicted RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 EBAG9O00559 213 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 RGL2O15211 777 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 BUB1O43683 1085 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 BEND6Q5SZJ8 279 aaPredicted RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 FAM71BQ8TC56 605 aa16.99■□□□□ 0.31
LMNB1-203ENST00000460265 IFIH1Q9BYX4 1025 aaKnown RBP16.99■□□□□ 0.31
LMNB1-203ENST00000460265 CXCR5P32302 372 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 AFAP1L1Q8TED9 768 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 RAD54LQ92698 747 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 DHX36Q9H2U1 1008 aaKnown RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 RIC8AQ9NPQ8 531 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 MYO6Q9UM54 1294 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 PLEKP08567 350 aaPredicted RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 MAGEA1P43355 309 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 POLR2FP61218 127 aaKnown RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 SF3B2Q13435 895 aaKnown RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 ADAM9Q13443 819 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 TTI2Q6NXR4 508 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 UNC13DQ70J99 1090 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 ZNF277Q9NRM2 450 aaPredicted RBP16.98■□□□□ 0.31
LMNB1-203ENST00000460265 DUSP10Q9Y6W6 482 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 CHD4Q14839 1912 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 GAKO14976 1311 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 KLRC4O43908 158 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 GCNT3O95395 438 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 ARHGAP4P98171 946 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 IRF2BP1Q8IU81 584 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 CNKSR1Q969H4 720 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 NUP58Q9BVL2 599 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 STK17AQ9UEE5 414 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 HDAC9Q9UKV0 1011 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 PLCH1Q4KWH8 1693 aa16.98■□□□□ 0.31
LMNB1-203ENST00000460265 POTEB2H3BUK9 544 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CLIC2O15247 247 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 NDUFB10O96000 172 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 MYL1P05976 194 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CCT5P48643 541 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CASP8Q14790 479 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CC2D2BQ6DHV5 1058 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 LRRC15Q8TF66 581 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 NT5C3AQ9H0P0 336 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 ECE1P42892 770 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 SP4Q02446 784 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 HHIPL2Q6UWX4 724 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 APTXQ7Z2E3 356 aaKnown RBP16.97■□□□□ 0.31
LMNB1-203ENST00000460265 SRGAP1Q7Z6B7 1085 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 KIAA0895Q8NCT3 520 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 MMTAG2Q9BU76 263 aaKnown RBP16.97■□□□□ 0.31
LMNB1-203ENST00000460265 BHMT2Q9H2M3 363 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 C4AP0C0L4 1744 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 C4BP0C0L5 1744 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CPP00450 1065 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 HAUS3Q68CZ6 603 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 SYCP3Q8IZU3 236 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 DUSP9Q99956 384 aaKnown RBP16.97■□□□□ 0.31
LMNB1-203ENST00000460265 C7orf25Q9BPX7 421 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 SEMA6BQ9H3T3 888 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 ARHGEF10LQ9HCE6 1279 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 STK32BQ9NY57 414 aa16.97■□□□□ 0.31
LMNB1-203ENST00000460265 CETN3O15182 167 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 PPP1R11O60927 126 aaPredicted RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 PRPF6O94906 941 aaKnown RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 CTTNQ14247 550 aaKnown RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 CYP2W1Q8TAV3 490 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 LSM14BQ9BX40 385 aaKnown RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 GBP3Q9H0R5 595 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 MAGEF1Q9HAY2 307 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 RGL1Q9NZL6 768 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 SAR1BQ9Y6B6 198 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 EIF4A3P38919 411 aaKnown RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 COASYQ13057 564 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 VWA3BQ502W6 1294 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 FAM83BQ5T0W9 1011 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 SYDE2Q5VT97 1194 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 C15orf52Q6ZUT6 534 aaKnown RBP16.96■□□□□ 0.31
LMNB1-203ENST00000460265 MYCT1Q8N699 235 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 PNMA5Q96PV4 448 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 HAUS4Q9H6D7 363 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 EMILIN3Q9NT22 766 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 CACNA1SQ13698 1873 aa16.96■□□□□ 0.31
LMNB1-203ENST00000460265 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.95■□□□□ 0.3
LMNB1-203ENST00000460265 TACC1O75410 805 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms