RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 FAM133AQ8N9E0 248 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 ERCC4Q92889 916 aaPredicted RBP11.63□□□□□ -0.55
USP39-210ENST00000459775 PNMA2Q9UL42 364 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CEP131Q9UPN4 1083 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CYP3A7-CYP3A51PA0A087WV96 503 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CYP3A4P08684 503 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 PFKFB1P16118 471 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CYP3A7P24462 503 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CIITAP33076 1130 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CAMK4Q16566 473 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 CEP55Q53EZ4 464 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 TMEM63BQ5T3F8 832 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 PLA2G4DQ86XP0 818 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 ETNPPLQ8TBG4 499 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 NSUN6Q8TEA1 469 aaKnown RBP11.63□□□□□ -0.55
USP39-210ENST00000459775 SYMPKQ92797 1274 aaKnown RBP11.63□□□□□ -0.55
USP39-210ENST00000459775 NUDT12Q9BQG2 462 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 MROH8Q9H579 483 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 TTC12Q9H892 705 aaPredicted RBP11.63□□□□□ -0.55
USP39-210ENST00000459775 ZFYVE28Q9HCC9 887 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 DACT1Q9NYF0 836 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 TMEM63CQ9P1W3 806 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 FBXO40Q9UH90 709 aa11.63□□□□□ -0.55
USP39-210ENST00000459775 HTTP42858 3142 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 DNAJC25-GNG10A0A024R161 153 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 DDX39AO00148 427 aaKnown RBP11.62□□□□□ -0.55
USP39-210ENST00000459775 ATP9AO75110 1047 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 ALDH5A1P51649 535 aaPredicted RBP11.62□□□□□ -0.55
USP39-210ENST00000459775 CCNA1P78396 465 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 SNW1Q13573 536 aaKnown RBP11.62□□□□□ -0.55
USP39-210ENST00000459775 ZFYVE27Q5T4F4 411 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 PCNX4Q63HM2 1172 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 DTHD1Q6ZMT9 781 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 VSIG10LQ86VR7 867 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 MBOAT7Q96N66 472 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 KCNMB3Q9NPA1 279 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 PTPN22Q9Y2R2 807 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 PFASO15067 1338 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 FRMPD4Q14CM0 1322 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 MEIS1O00470 390 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 CUTAO60888 179 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 PEX14O75381 377 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 RESP18Q5W5W9 173 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 LRRC15Q8TF66 581 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 MRPS27Q92552 414 aaKnown RBP11.62□□□□□ -0.55
USP39-210ENST00000459775 MXRA8Q9BRK3 442 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 TMEM106CQ9BVX2 250 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 KCNH7Q9NS40 1196 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 WDR70Q9NW82 654 aa11.62□□□□□ -0.55
USP39-210ENST00000459775 CHMP2AO43633 222 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 CMA1P23946 247 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 ITGB3BPQ13352 177 aaPredicted RBP11.61□□□□□ -0.55
USP39-210ENST00000459775 Q4G0T1 1027 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 SEPT14Q6ZU15 432 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 SHCBP1Q8NEM2 672 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 ENGASEQ8NFI3 743 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 GTF3C2Q8WUA4 911 aaPredicted RBP11.61□□□□□ -0.55
USP39-210ENST00000459775 MAP3K20Q9NYL2 800 aaKnown RBP11.61□□□□□ -0.55
USP39-210ENST00000459775 UBIAD1Q9Y5Z9 338 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 LCTP09848 1927 aa11.61□□□□□ -0.55
USP39-210ENST00000459775 POTEFA5A3E0 1075 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 GCFC2P16383 781 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 SP2Q02086 613 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 KARSQ15046 597 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 KLHL40Q2TBA0 621 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 MCTP2Q6DN12 878 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 PLEKHH3Q7Z736 793 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 ZNF513Q8N8E2 541 aaPredicted RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 NPLOC4Q8TAT6 608 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 FERMT2Q96AC1 680 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 MMTAG2Q9BU76 263 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 EHMT1Q9H9B1 1298 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 PCDHA12Q9UN75 941 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 IVNS1ABPQ9Y6Y0 642 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 A0A1W2PQ27 194 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 A0A1W2PQ64 194 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 A0A1W2PQD8 194 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 EML1O00423 815 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 POLR2DO15514 142 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 BMP15O95972 392 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 CCND2P30279 289 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 MTMR1Q13613 665 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 ECM1Q16610 540 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 ARL6IP4Q66PJ3 421 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 DPP9Q86TI2 863 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 GRAMD1CQ8IYS0 662 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 FMR1NBQ8N0W7 255 aaPredicted RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 STAMQ92783 540 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 ZNF577Q9BSK1 485 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 ZCCHC17Q9NP64 241 aaKnown RBP11.6□□□□□ -0.55
USP39-210ENST00000459775 JADE2Q9NQC1 790 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 PDGFCQ9NRA1 345 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 KCNH3Q9ULD8 1083 aa11.6□□□□□ -0.55
USP39-210ENST00000459775 IPO5O00410 1097 aaKnown RBP11.59□□□□□ -0.55
USP39-210ENST00000459775 CYP2B6P20813 491 aa11.59□□□□□ -0.55
USP39-210ENST00000459775 SP4Q02446 784 aa11.59□□□□□ -0.55
USP39-210ENST00000459775 SPIRE1Q08AE8 756 aa11.59□□□□□ -0.55
USP39-210ENST00000459775 GRB14Q14449 540 aa11.59□□□□□ -0.55
USP39-210ENST00000459775 CCL14Q16627 93 aa11.59□□□□□ -0.55
USP39-210ENST00000459775 ZNF792Q3KQV3 632 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms